miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 48150 0.66 0.88301
Target:  5'- -uUCUGCGCCGCgGUCGGGcgccUGgCGGc -3'
miRNA:   3'- ccAGGUGUGGUGgCAGUCCu---ACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 148662 0.66 0.88301
Target:  5'- -cUCCugccCACCACCccCAGGGUcugGCCGGc -3'
miRNA:   3'- ccAGGu---GUGGUGGcaGUCCUA---CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 4207 0.66 0.88301
Target:  5'- uGGUCUGCGgCGCUGgCGGGG-GCgCGGg -3'
miRNA:   3'- -CCAGGUGUgGUGGCaGUCCUaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 48972 0.66 0.88301
Target:  5'- gGGUUU-CGCCACCGcccccCAGGccaGCCGGg -3'
miRNA:   3'- -CCAGGuGUGGUGGCa----GUCCua-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 143304 0.66 0.88301
Target:  5'- cGUCCGC-CC-CCGgCGGGucGCCGGc -3'
miRNA:   3'- cCAGGUGuGGuGGCaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 4072 0.66 0.88301
Target:  5'- cGGcCCGCgguCGCCG-CGGGGguccggGCCGGg -3'
miRNA:   3'- -CCaGGUGug-GUGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 29386 0.66 0.88301
Target:  5'- cGGgcaCCACucaggGCCgcGCCGgCGGGgcGCCGGg -3'
miRNA:   3'- -CCa--GGUG-----UGG--UGGCaGUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 13666 0.66 0.882326
Target:  5'- --aCCGCgacaacuagcaggGCCGCCGUCccGAcGCCGGa -3'
miRNA:   3'- ccaGGUG-------------UGGUGGCAGucCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 106728 0.67 0.876082
Target:  5'- cGUCCuaGCCAUCGcCAGGggGCCu- -3'
miRNA:   3'- cCAGGugUGGUGGCaGUCCuaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 31671 0.67 0.876082
Target:  5'- gGGcCCGCGCCGCC--CGccGUGCCGGu -3'
miRNA:   3'- -CCaGGUGUGGUGGcaGUccUACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 137800 0.67 0.876082
Target:  5'- aGGUCCugGCCguaCG-CGGGGauguacuggUGCUGGa -3'
miRNA:   3'- -CCAGGugUGGug-GCaGUCCU---------ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 43161 0.67 0.874671
Target:  5'- cGUcCCGCGCCGCCG-CGGcaaacgccugGCCGGu -3'
miRNA:   3'- cCA-GGUGUGGUGGCaGUCcua-------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 17216 0.67 0.868946
Target:  5'- uGGUugUCGCACgGCCGccuuUCGGGGUcGCgCGGg -3'
miRNA:   3'- -CCA--GGUGUGgUGGC----AGUCCUA-CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 34817 0.67 0.868946
Target:  5'- gGGgcccCCGCGCU-CCGcCGGGGgcccggGCCGGa -3'
miRNA:   3'- -CCa---GGUGUGGuGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 77460 0.67 0.868946
Target:  5'- gGGaCCAUGCCGCCcUCAucGAUGCCGcGg -3'
miRNA:   3'- -CCaGGUGUGGUGGcAGUc-CUACGGC-C- -5'
5335 5' -56.9 NC_001798.1 + 99953 0.67 0.861607
Target:  5'- cGcCCGCGCCACUG-CGGGAggcGCCc- -3'
miRNA:   3'- cCaGGUGUGGUGGCaGUCCUa--CGGcc -5'
5335 5' -56.9 NC_001798.1 + 86122 0.67 0.861607
Target:  5'- --gCCGCGCCGCgGUCAGcGAgucCUGGg -3'
miRNA:   3'- ccaGGUGUGGUGgCAGUC-CUac-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 58308 0.67 0.861607
Target:  5'- gGGUCUgACACagcuCCGUCAGGcccGCCGc -3'
miRNA:   3'- -CCAGG-UGUGgu--GGCAGUCCua-CGGCc -5'
5335 5' -56.9 NC_001798.1 + 60547 0.67 0.85407
Target:  5'- -cUCCAC-CCGCCGcaggUCAGGGUaCUGGu -3'
miRNA:   3'- ccAGGUGuGGUGGC----AGUCCUAcGGCC- -5'
5335 5' -56.9 NC_001798.1 + 16218 0.67 0.85407
Target:  5'- ---aCGCGCCGCCuGUgGGGGggcggugggGCCGGg -3'
miRNA:   3'- ccagGUGUGGUGG-CAgUCCUa--------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.