miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5337 3' -58.7 NC_001798.1 + 15114 0.66 0.833159
Target:  5'- cGGuGGCGCUgucgucgucCUCGGGggguuCGCCgUCCCCGGc -3'
miRNA:   3'- cCC-CCGCGA---------GAGUUU-----GUGG-AGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 9173 0.66 0.833159
Target:  5'- gGGGGGCagGgUCUCuGGCGggUCCCCGc -3'
miRNA:   3'- -CCCCCG--CgAGAGuUUGUggAGGGGCu -5'
5337 3' -58.7 NC_001798.1 + 16230 0.66 0.833159
Target:  5'- uGGGGGgGCggUgGGGCcggggcCCUCCCCGc -3'
miRNA:   3'- -CCCCCgCGagAgUUUGu-----GGAGGGGCu -5'
5337 3' -58.7 NC_001798.1 + 51932 0.66 0.832348
Target:  5'- uGGGGGCcgccgccgugccGCUgCUCAGcgcgggaggggccGCGCCcCCCCa- -3'
miRNA:   3'- -CCCCCG------------CGA-GAGUU-------------UGUGGaGGGGcu -5'
5337 3' -58.7 NC_001798.1 + 32967 0.66 0.824965
Target:  5'- gGGGGGgGa---CGGACACggCCCCGAa -3'
miRNA:   3'- -CCCCCgCgagaGUUUGUGgaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 59170 0.66 0.824965
Target:  5'- cGGGGGCGCcCgUCGucccCAUCaUCCCCu- -3'
miRNA:   3'- -CCCCCGCGaG-AGUuu--GUGG-AGGGGcu -5'
5337 3' -58.7 NC_001798.1 + 76986 0.66 0.824965
Target:  5'- uGGGGCaguaccgggagGCcCUgGAACACCcgaCCCCGGa -3'
miRNA:   3'- cCCCCG-----------CGaGAgUUUGUGGa--GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 88754 0.66 0.824965
Target:  5'- cGGGGGCGCg--CAuGCcgGCCgCCuCCGGa -3'
miRNA:   3'- -CCCCCGCGagaGUuUG--UGGaGG-GGCU- -5'
5337 3' -58.7 NC_001798.1 + 448 0.66 0.824965
Target:  5'- cGGGGcuGCGgUCccgCGGcCGCCUCCCCc- -3'
miRNA:   3'- -CCCC--CGCgAGa--GUUuGUGGAGGGGcu -5'
5337 3' -58.7 NC_001798.1 + 17773 0.66 0.824965
Target:  5'- cGGGuGGCuGCUaUCAAagacACACCcCUCCGAc -3'
miRNA:   3'- -CCC-CCG-CGAgAGUU----UGUGGaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 31994 0.66 0.824965
Target:  5'- aGGGcGGCGC-C----GCGCCgggCCCCGGa -3'
miRNA:   3'- -CCC-CCGCGaGaguuUGUGGa--GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 64638 0.66 0.816603
Target:  5'- uGGGGCGCag-CGucuCGCCgUCCCUGGu -3'
miRNA:   3'- cCCCCGCGagaGUuu-GUGG-AGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 78565 0.66 0.816603
Target:  5'- cGGGaGGCGCUggccgCgcgCGAGCGCCgggCCCaGAu -3'
miRNA:   3'- -CCC-CCGCGA-----Ga--GUUUGUGGa--GGGgCU- -5'
5337 3' -58.7 NC_001798.1 + 80715 0.66 0.816603
Target:  5'- uGGuGGCGCUC-CGcAACACCacggccuucUCCCgCGAg -3'
miRNA:   3'- cCC-CCGCGAGaGU-UUGUGG---------AGGG-GCU- -5'
5337 3' -58.7 NC_001798.1 + 150346 0.66 0.816603
Target:  5'- cGGGGCGCg--CGGuGCGCgUCCaCCGGc -3'
miRNA:   3'- cCCCCGCGagaGUU-UGUGgAGG-GGCU- -5'
5337 3' -58.7 NC_001798.1 + 15511 0.66 0.814912
Target:  5'- gGGGGGCGUUUUCGcugcggaGGCGCUgcugguguucgugUgCCCGGc -3'
miRNA:   3'- -CCCCCGCGAGAGU-------UUGUGG-------------AgGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 96101 0.66 0.808082
Target:  5'- cGGGGCGCgcCUCugaccCACCcCCCCc- -3'
miRNA:   3'- cCCCCGCGa-GAGuuu--GUGGaGGGGcu -5'
5337 3' -58.7 NC_001798.1 + 88987 0.66 0.808082
Target:  5'- cGGGGGUGCUCUgGGGgA--UCCgCGAg -3'
miRNA:   3'- -CCCCCGCGAGAgUUUgUggAGGgGCU- -5'
5337 3' -58.7 NC_001798.1 + 37174 0.66 0.808082
Target:  5'- uGGcGGGcCGCUCggcgcgcCAGGCGCCgCgCCGAa -3'
miRNA:   3'- -CC-CCC-GCGAGa------GUUUGUGGaGgGGCU- -5'
5337 3' -58.7 NC_001798.1 + 72333 0.66 0.807222
Target:  5'- gGGGGGUGCUgcaggagCUCGccgagcGCGCCgaccCCCUGGu -3'
miRNA:   3'- -CCCCCGCGA-------GAGUu-----UGUGGa---GGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.