miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5337 3' -58.7 NC_001798.1 + 57216 0.82 0.120785
Target:  5'- uGGGGGCGCUgUCAuACACCaguuggcCCCCGGg -3'
miRNA:   3'- -CCCCCGCGAgAGUuUGUGGa------GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 71410 0.79 0.189265
Target:  5'- cGGGGGUGCcCgcgCGGACGCC-CCCCGGc -3'
miRNA:   3'- -CCCCCGCGaGa--GUUUGUGGaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 47880 0.78 0.218798
Target:  5'- cGGcGGGCGCUCgCAcGCcCCUCCCCGc -3'
miRNA:   3'- -CC-CCCGCGAGaGUuUGuGGAGGGGCu -5'
5337 3' -58.7 NC_001798.1 + 80555 0.77 0.246337
Target:  5'- gGGGGGCGCg---AGGCGucCCUCCCCGAg -3'
miRNA:   3'- -CCCCCGCGagagUUUGU--GGAGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 123945 0.76 0.303063
Target:  5'- cGGGGGC-CUggu-GGCACCUCCCCGGc -3'
miRNA:   3'- -CCCCCGcGAgaguUUGUGGAGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 132163 0.74 0.361491
Target:  5'- cGGGGCGCccccCcCGGACGCCcCCCCGGa -3'
miRNA:   3'- cCCCCGCGa---GaGUUUGUGGaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 70392 0.74 0.385333
Target:  5'- cGGGcuuccggagacGGCGCUCUuggcCGAGaACCUCCCCGGg -3'
miRNA:   3'- -CCC-----------CCGCGAGA----GUUUgUGGAGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 78868 0.73 0.418699
Target:  5'- uGGGGGCGCUCUUugauacucGGCGCCgcgucgacgCCCUGc -3'
miRNA:   3'- -CCCCCGCGAGAGu-------UUGUGGa--------GGGGCu -5'
5337 3' -58.7 NC_001798.1 + 59264 0.71 0.527303
Target:  5'- cGGGGcccgacgGCGCUCUCGgugaAGCugCgaagggCCCCGGg -3'
miRNA:   3'- -CCCC-------CGCGAGAGU----UUGugGa-----GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 3013 0.71 0.528265
Target:  5'- cGGGGGCGCgg-CGGGCcgggcuccgGCCagCCCCGGc -3'
miRNA:   3'- -CCCCCGCGagaGUUUG---------UGGa-GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 2643 0.71 0.547627
Target:  5'- gGGGcGGgGCUCUUgcgcuugcGCGCCUCCCgCGGc -3'
miRNA:   3'- -CCC-CCgCGAGAGuu------UGUGGAGGG-GCU- -5'
5337 3' -58.7 NC_001798.1 + 3790 0.71 0.557393
Target:  5'- cGGGGCGCccgaggcCUCGAaccgggcccGCGCCUCCuCCGc -3'
miRNA:   3'- cCCCCGCGa------GAGUU---------UGUGGAGG-GGCu -5'
5337 3' -58.7 NC_001798.1 + 111138 0.7 0.567209
Target:  5'- aGGGcGGCGCUgUCGGcccGCGCgucgCUCCCCa- -3'
miRNA:   3'- -CCC-CCGCGAgAGUU---UGUG----GAGGGGcu -5'
5337 3' -58.7 NC_001798.1 + 154099 0.7 0.567209
Target:  5'- cGGGGCGCgg-CcGGCGCCggggaCCCCGGc -3'
miRNA:   3'- cCCCCGCGagaGuUUGUGGa----GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 53323 0.7 0.567209
Target:  5'- uGGcGGCGCgg-CAccauAACACCgUCCCCGAg -3'
miRNA:   3'- cCC-CCGCGagaGU----UUGUGG-AGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 34511 0.7 0.570162
Target:  5'- aGGGGcGCGCUCUCucacacgAGACAcacgcaggcgcccccCCcCCCCGGa -3'
miRNA:   3'- -CCCC-CGCGAGAG-------UUUGU---------------GGaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 128031 0.7 0.577067
Target:  5'- gGGGGGCGCacacgccaUCgaccCGGACugCagCCCCGGu -3'
miRNA:   3'- -CCCCCGCG--------AGa---GUUUGugGa-GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 150472 0.7 0.577067
Target:  5'- cGGGGGCGCg--C-GGCGCg-CCCCGAc -3'
miRNA:   3'- -CCCCCGCGagaGuUUGUGgaGGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 35005 0.7 0.586963
Target:  5'- cGGGGCGCacCUCGGcgGCCaagCCCCGGc -3'
miRNA:   3'- cCCCCGCGa-GAGUUugUGGa--GGGGCU- -5'
5337 3' -58.7 NC_001798.1 + 138233 0.7 0.586963
Target:  5'- cGGGGGUGUcgaUCAggUGCCcCCCCGc -3'
miRNA:   3'- -CCCCCGCGag-AGUuuGUGGaGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.