miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 3' -66.8 NC_001798.1 + 111744 0.66 0.497713
Target:  5'- cCCGcGCCcccggCCCCGGucccGGCCaucgGuUGGGGGCg -3'
miRNA:   3'- -GGC-CGGa----GGGGCU----CCGGg---C-GCUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 145525 0.66 0.497713
Target:  5'- cCCGGCCgccgcgcgcCCCCGcccGGCCgcccgcguCGCGccGGCg -3'
miRNA:   3'- -GGCCGGa--------GGGGCu--CCGG--------GCGCucCCG- -5'
5340 3' -66.8 NC_001798.1 + 2395 0.66 0.497713
Target:  5'- -aGGCCUCCagggcggcggCCGAGggcGCCgGCGuguggcuGGGCc -3'
miRNA:   3'- ggCCGGAGG----------GGCUC---CGGgCGCu------CCCG- -5'
5340 3' -66.8 NC_001798.1 + 85987 0.66 0.497713
Target:  5'- -aGGCCgCCgCCGGGGCgCUGgCGcAGGGg -3'
miRNA:   3'- ggCCGGaGG-GGCUCCG-GGC-GC-UCCCg -5'
5340 3' -66.8 NC_001798.1 + 74089 0.66 0.497713
Target:  5'- -gGGCUUCUUCGGGgaGCCCacgGCG-GGGCu -3'
miRNA:   3'- ggCCGGAGGGGCUC--CGGG---CGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 146610 0.66 0.496829
Target:  5'- gCGGCCcacgccUCCCGccgcauuAGGCCCcCGcGGGCa -3'
miRNA:   3'- gGCCGGa-----GGGGC-------UCCGGGcGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 2455 0.66 0.496829
Target:  5'- gCCaGCCgCCCugcggguCGGGGCCCuCGGcGGGCc -3'
miRNA:   3'- -GGcCGGaGGG-------GCUCCGGGcGCU-CCCG- -5'
5340 3' -66.8 NC_001798.1 + 132850 0.66 0.495065
Target:  5'- gCCGcGCUgaCCCCGAGGaacuuuugucuguuUuuGCGGGGGa -3'
miRNA:   3'- -GGC-CGGa-GGGGCUCC--------------GggCGCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 34737 0.66 0.488912
Target:  5'- -gGGUCgggCCCgGGagcggggcGGCCCGgGAGGGa -3'
miRNA:   3'- ggCCGGa--GGGgCU--------CCGGGCgCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 78833 0.66 0.488912
Target:  5'- aCGGCCccggCCCCu-GGCgcggcacgccggCCGCcuGGGGGCg -3'
miRNA:   3'- gGCCGGa---GGGGcuCCG------------GGCG--CUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 110912 0.66 0.488912
Target:  5'- gCGGCCagccgcCCCCGccGGCCCGCGGucaaacGCg -3'
miRNA:   3'- gGCCGGa-----GGGGCu-CCGGGCGCUcc----CG- -5'
5340 3' -66.8 NC_001798.1 + 57175 0.66 0.486286
Target:  5'- gCCGGCgCcCUCCGcccagaucacgugcGGGUCCGUucgguuGGGGGCg -3'
miRNA:   3'- -GGCCG-GaGGGGC--------------UCCGGGCG------CUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 3199 0.66 0.483667
Target:  5'- cCCGGCCggCgCgGAGGCgggCGCGgcgcucaggcgccccAGGGCg -3'
miRNA:   3'- -GGCCGGa-GgGgCUCCGg--GCGC---------------UCCCG- -5'
5340 3' -66.8 NC_001798.1 + 91345 0.66 0.480185
Target:  5'- gCCGGCUUccCCCCGGGggaagccgggccGCCCGC---GGCa -3'
miRNA:   3'- -GGCCGGA--GGGGCUC------------CGGGCGcucCCG- -5'
5340 3' -66.8 NC_001798.1 + 2594 0.66 0.480185
Target:  5'- gCGGCUcuUCUUCGGGGggCGCG-GGGCg -3'
miRNA:   3'- gGCCGG--AGGGGCUCCggGCGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 56160 0.66 0.480185
Target:  5'- gCGGCUUauaacgCCCGGGGgaCgGCGGGGGg -3'
miRNA:   3'- gGCCGGAg-----GGGCUCCg-GgCGCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 98902 0.66 0.480185
Target:  5'- gCCGcGCCgcugCCCGAcGcGCCCG-GAGGGg -3'
miRNA:   3'- -GGC-CGGag--GGGCU-C-CGGGCgCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 112187 0.66 0.480185
Target:  5'- aCgGGCCgcacgUCCCGcAGG-CCGCGcuGGCg -3'
miRNA:   3'- -GgCCGGa----GGGGC-UCCgGGCGCucCCG- -5'
5340 3' -66.8 NC_001798.1 + 146757 0.66 0.480185
Target:  5'- gCCGGagagCCCGAGccccGCCCGCGuguugcuguGGGCa -3'
miRNA:   3'- -GGCCggagGGGCUC----CGGGCGCu--------CCCG- -5'
5340 3' -66.8 NC_001798.1 + 48255 0.66 0.480185
Target:  5'- cUCGaCCUCaCCaccauucgcgUGAcGGUCUGCGAGGGCa -3'
miRNA:   3'- -GGCcGGAG-GG----------GCU-CCGGGCGCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.