miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 3' -66.8 NC_001798.1 + 5 0.67 0.437756
Target:  5'- cCCcGCCUcuuuucCCCCGGGGagucaaccCCCGgGGGGGg -3'
miRNA:   3'- -GGcCGGA------GGGGCUCC--------GGGCgCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 137 0.72 0.209327
Target:  5'- gCCGGCCgcucCCCCGcGGGCgccgccccuccccCCGCGcgccgcGGGGCu -3'
miRNA:   3'- -GGCCGGa---GGGGC-UCCG-------------GGCGC------UCCCG- -5'
5340 3' -66.8 NC_001798.1 + 478 0.7 0.26215
Target:  5'- gCGGCCgccucCCCCGcgccccGCCC-CGGGGGCu -3'
miRNA:   3'- gGCCGGa----GGGGCuc----CGGGcGCUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 573 0.66 0.462964
Target:  5'- cCCGuGCCUUCCCucccgcuCCUGCGGGGGg -3'
miRNA:   3'- -GGC-CGGAGGGGcucc---GGGCGCUCCCg -5'
5340 3' -66.8 NC_001798.1 + 1201 0.68 0.354732
Target:  5'- gCGGCCagcaccgUCCCCGcgcggcccgcGGCCgacgcccagcguaucUGCGGGGGCg -3'
miRNA:   3'- gGCCGG-------AGGGGCu---------CCGG---------------GCGCUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 2102 0.68 0.35257
Target:  5'- -gGGCCcgcCCCCGGcgcGGCCCGCGGccaGGUc -3'
miRNA:   3'- ggCCGGa--GGGGCU---CCGGGCGCUc--CCG- -5'
5340 3' -66.8 NC_001798.1 + 2395 0.66 0.497713
Target:  5'- -aGGCCUCCagggcggcggCCGAGggcGCCgGCGuguggcuGGGCc -3'
miRNA:   3'- ggCCGGAGG----------GGCUC---CGGgCGCu------CCCG- -5'
5340 3' -66.8 NC_001798.1 + 2455 0.66 0.496829
Target:  5'- gCCaGCCgCCCugcggguCGGGGCCCuCGGcGGGCc -3'
miRNA:   3'- -GGcCGGaGGG-------GCUCCGGGcGCU-CCCG- -5'
5340 3' -66.8 NC_001798.1 + 2550 0.71 0.245413
Target:  5'- gCGGCC-CCCgcgggaGGGGCggCCGCG-GGGCg -3'
miRNA:   3'- gGCCGGaGGGg-----CUCCG--GGCGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 2594 0.66 0.480185
Target:  5'- gCGGCUcuUCUUCGGGGggCGCG-GGGCg -3'
miRNA:   3'- gGCCGG--AGGGGCUCCggGCGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 2988 0.79 0.066747
Target:  5'- gCGGCCggCCCGcGGGCCCcgggcGCGGGGGCg -3'
miRNA:   3'- gGCCGGagGGGC-UCCGGG-----CGCUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 3199 0.66 0.483667
Target:  5'- cCCGGCCggCgCgGAGGCgggCGCGgcgcucaggcgccccAGGGCg -3'
miRNA:   3'- -GGCCGGa-GgGgCUCCGg--GCGC---------------UCCCG- -5'
5340 3' -66.8 NC_001798.1 + 3645 0.71 0.247592
Target:  5'- -aGGCCugguccagcgccacgUCCCCGGGcGCCaCGCGcGGGUu -3'
miRNA:   3'- ggCCGG---------------AGGGGCUC-CGG-GCGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 3801 0.71 0.23791
Target:  5'- -aGGCCUCgaaCCG-GGCCCGCGccuccuccgccucGGGCg -3'
miRNA:   3'- ggCCGGAGg--GGCuCCGGGCGCu------------CCCG- -5'
5340 3' -66.8 NC_001798.1 + 4059 0.68 0.348274
Target:  5'- gCGGCgCUCCagGcGGCCCGCGGucgccgcggggguccGGGCc -3'
miRNA:   3'- gGCCG-GAGGggCuCCGGGCGCU---------------CCCG- -5'
5340 3' -66.8 NC_001798.1 + 4126 0.78 0.081253
Target:  5'- cUCGGCCggggcgccgcCCCCGGGGCCCuCGcGGGCa -3'
miRNA:   3'- -GGCCGGa---------GGGGCUCCGGGcGCuCCCG- -5'
5340 3' -66.8 NC_001798.1 + 4164 0.72 0.214603
Target:  5'- cCCcGCCUCCUCGucGUCCGCgccGAGGGUc -3'
miRNA:   3'- -GGcCGGAGGGGCucCGGGCG---CUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 4660 0.7 0.267932
Target:  5'- aCGGCCUCguccaccaUCGAGGCCaGC-AGGGCc -3'
miRNA:   3'- gGCCGGAGg-------GGCUCCGGgCGcUCCCG- -5'
5340 3' -66.8 NC_001798.1 + 4735 0.73 0.178736
Target:  5'- aCGGCCUCCCCGgacgccGGGgCCGCcucGucGGCa -3'
miRNA:   3'- gGCCGGAGGGGC------UCCgGGCG---CucCCG- -5'
5340 3' -66.8 NC_001798.1 + 4813 0.71 0.229571
Target:  5'- uCCGGCCcaccgugccaCCCGAacccgGGCCgCGCGgcGGGGCg -3'
miRNA:   3'- -GGCCGGag--------GGGCU-----CCGG-GCGC--UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.