miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 78547 0.66 0.891507
Target:  5'- cGGGUCaUGGcgGGCCUGcGGGAGGCGc-- -3'
miRNA:   3'- aCCCGG-ACC--UCGGGC-CUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 61038 0.66 0.891507
Target:  5'- gGGGCCgGGGGaCCC-GAGccACAGAGc -3'
miRNA:   3'- aCCCGGaCCUC-GGGcCUCuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 8221 0.66 0.890824
Target:  5'- aUGGGUccuucguCUGGAGCCCGuacccggcaGAGAGAUu--- -3'
miRNA:   3'- -ACCCG-------GACCUCGGGC---------CUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 45422 0.66 0.88945
Target:  5'- gGGGCUUGGAGCgaccgaggccccccCCGGGccuACGAGGg -3'
miRNA:   3'- aCCCGGACCUCG--------------GGCCUcuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 24896 0.66 0.884566
Target:  5'- gGGGcCCUGG-GCCCGGcgcuGccGCGGAGc -3'
miRNA:   3'- aCCC-GGACCuCGGGCCu---CuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 30038 0.66 0.884566
Target:  5'- aGGGa--GGAGCCCGagagcGGGGGACAGGGg -3'
miRNA:   3'- aCCCggaCCUCGGGC-----CUCUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 28706 0.66 0.884566
Target:  5'- cGuGCCUGGAGCCC-GAGGccCGAGc -3'
miRNA:   3'- aCcCGGACCUCGGGcCUCUuuGUUUu -5'
5340 5' -56 NC_001798.1 + 58791 0.66 0.884566
Target:  5'- gGGGCCgcGGGGCgaGGAGGAAa---- -3'
miRNA:   3'- aCCCGGa-CCUCGggCCUCUUUguuuu -5'
5340 5' -56 NC_001798.1 + 75885 0.66 0.884566
Target:  5'- cGGGUCgaggcGGAgGCCCGcGAGAugcGCGAGg -3'
miRNA:   3'- aCCCGGa----CCU-CGGGC-CUCUu--UGUUUu -5'
5340 5' -56 NC_001798.1 + 97518 0.66 0.884566
Target:  5'- cGGGCCgccgcGGAGga-GGGGggGCGGAGg -3'
miRNA:   3'- aCCCGGa----CCUCgggCCUCuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 28872 0.66 0.884566
Target:  5'- -cGGCCggcGGAGCCCcGGAGcucCGAAGg -3'
miRNA:   3'- acCCGGa--CCUCGGG-CCUCuuuGUUUU- -5'
5340 5' -56 NC_001798.1 + 97476 0.66 0.878121
Target:  5'- gGGGCCggcggcgcgaccgggGGGGCCgaGGAGGAAgAGc- -3'
miRNA:   3'- aCCCGGa--------------CCUCGGg-CCUCUUUgUUuu -5'
5340 5' -56 NC_001798.1 + 30152 0.66 0.877394
Target:  5'- cGGGCggGGGGCCggggugagGGAGGGACAc-- -3'
miRNA:   3'- aCCCGgaCCUCGGg-------CCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 148084 0.66 0.877394
Target:  5'- cGGGCC-GGGGgCCGGGGccGCu--- -3'
miRNA:   3'- aCCCGGaCCUCgGGCCUCuuUGuuuu -5'
5340 5' -56 NC_001798.1 + 154052 0.66 0.877394
Target:  5'- gGGGCgcggcacggCUGGAGCgCCGGGGcgcGGCAc-- -3'
miRNA:   3'- aCCCG---------GACCUCG-GGCCUCu--UUGUuuu -5'
5340 5' -56 NC_001798.1 + 59560 0.66 0.876664
Target:  5'- gGGGgCUGGGGCUCgcgucgccggucuGGAGGucGCGAAAg -3'
miRNA:   3'- aCCCgGACCUCGGG-------------CCUCUu-UGUUUU- -5'
5340 5' -56 NC_001798.1 + 19729 0.66 0.876664
Target:  5'- cGGGCUgGGGGUcccgcgcucauggCCGGAGAAAUg--- -3'
miRNA:   3'- aCCCGGaCCUCG-------------GGCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 153572 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 153534 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 124575 0.66 0.869994
Target:  5'- gGGGag-GGcGGCaCCGGGGAAACAGGc -3'
miRNA:   3'- aCCCggaCC-UCG-GGCCUCUUUGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.