#
miRNA: 3'- aC-CCGGACCUCG-GGCCUCUU----------UGUUUu -5'
miRNA: 3'- aCCCGGACCU---CGGGCC--UCuuUGUuuu -5'
miRNA: 3'- aCCCGGaCCUCgGGCCUCUUUGUUUU- -5'
miRNA: 3'- -ACCCGGACCU------CGGGCCUCUUUGuuuu -5'
Results 81 - 84 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 5340 | 5' | -56 | NC_001798.1 | + | 129140 | 0.77 | 0.290128 |
|
Target: 5'- cGuGGCCUGGAGCuCCGGGGAGcugguucgccGCGAGc -3' miRNA: 3'- aC-CCGGACCUCG-GGCCUCUU----------UGUUUu -5' |
|||||||
| 5340 | 5' | -56 | NC_001798.1 | + | 122094 | 0.79 | 0.221943 |
|
Target: 5'- cGGGCCUGGAgccGCCCGGcgGGggGCGc-- -3' miRNA: 3'- aCCCGGACCU---CGGGCC--UCuuUGUuuu -5' |
|||||||
| 5340 | 5' | -56 | NC_001798.1 | + | 6394 | 0.81 | 0.181337 |
|
Target: 5'- gGGGCCgGGGGgCCGGGGGGACGGGGg -3' miRNA: 3'- aCCCGGaCCUCgGGCCUCUUUGUUUU- -5' |
|||||||
| 5340 | 5' | -56 | NC_001798.1 | + | 81408 | 0.82 | 0.151347 |
|
Target: 5'- gUGGGCCUGGAuccacgGCCUGGAGGAGCu--- -3' miRNA: 3'- -ACCCGGACCU------CGGGCCUCUUUGuuuu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home