miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 81408 0.82 0.151347
Target:  5'- gUGGGCCUGGAuccacgGCCUGGAGGAGCu--- -3'
miRNA:   3'- -ACCCGGACCU------CGGGCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 6394 0.81 0.181337
Target:  5'- gGGGCCgGGGGgCCGGGGGGACGGGGg -3'
miRNA:   3'- aCCCGGaCCUCgGGCCUCUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 122094 0.79 0.221943
Target:  5'- cGGGCCUGGAgccGCCCGGcgGGggGCGc-- -3'
miRNA:   3'- aCCCGGACCU---CGGGCC--UCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 129140 0.77 0.290128
Target:  5'- cGuGGCCUGGAGCuCCGGGGAGcugguucgccGCGAGc -3'
miRNA:   3'- aC-CCGGACCUCG-GGCCUCUU----------UGUUUu -5'
5340 5' -56 NC_001798.1 + 95020 0.77 0.304162
Target:  5'- cGGGCCUGGAGgCCGGGGcccGCGc-- -3'
miRNA:   3'- aCCCGGACCUCgGGCCUCuu-UGUuuu -5'
5340 5' -56 NC_001798.1 + 29682 0.77 0.311372
Target:  5'- cGGGaggaGGAGaCCCGGAGAGACAGAGa -3'
miRNA:   3'- aCCCgga-CCUC-GGGCCUCUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 106746 0.76 0.365451
Target:  5'- gGGGCCUccGGAGCCCGcGGGGAucCGGAGc -3'
miRNA:   3'- aCCCGGA--CCUCGGGC-CUCUUu-GUUUU- -5'
5340 5' -56 NC_001798.1 + 51474 0.74 0.425674
Target:  5'- cGGGCCgcgugucGGGCCCGGAGcuGCAGGc -3'
miRNA:   3'- aCCCGGac-----CUCGGGCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 109362 0.74 0.462631
Target:  5'- -cGGCCUGGccGCCCGGGGAGcaGCGGGc -3'
miRNA:   3'- acCCGGACCu-CGGGCCUCUU--UGUUUu -5'
5340 5' -56 NC_001798.1 + 42885 0.74 0.462631
Target:  5'- aGGGCCucgUGGAG-CCGGGGAAAgGGGAc -3'
miRNA:   3'- aCCCGG---ACCUCgGGCCUCUUUgUUUU- -5'
5340 5' -56 NC_001798.1 + 15941 0.73 0.481731
Target:  5'- aGGGCCccgGGGGCCCaauGGGGcgGCAGAc -3'
miRNA:   3'- aCCCGGa--CCUCGGG---CCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 115842 0.73 0.501204
Target:  5'- gGGGCCUGGAGCUCGGcGuuGGCc--- -3'
miRNA:   3'- aCCCGGACCUCGGGCCuCu-UUGuuuu -5'
5340 5' -56 NC_001798.1 + 29398 0.73 0.521017
Target:  5'- aGGGCCgcgccggcGGGGCgCCGGGGGGACu--- -3'
miRNA:   3'- aCCCGGa-------CCUCG-GGCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 6266 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6344 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6305 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 111605 0.72 0.540115
Target:  5'- cGGGgcggccuCCUGGAGCCCcGGGGGcGGCAGAc -3'
miRNA:   3'- aCCC-------GGACCUCGGG-CCUCU-UUGUUUu -5'
5340 5' -56 NC_001798.1 + 135233 0.71 0.582056
Target:  5'- cGGGCUgccGGaAGCCCGGGGGcgGGCGGGc -3'
miRNA:   3'- aCCCGGa--CC-UCGGGCCUCU--UUGUUUu -5'
5340 5' -56 NC_001798.1 + 6585 0.71 0.592399
Target:  5'- cGGGCCgGGGGgaCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGaCCUCggGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 15199 0.71 0.592399
Target:  5'- gGGGgCUGGcgAGCCgGGGGGAGCGu-- -3'
miRNA:   3'- aCCCgGACC--UCGGgCCUCUUUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.