Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5340 | 5' | -56 | NC_001798.1 | + | 6585 | 0.71 | 0.592399 |
Target: 5'- cGGGCCgGGGGgaCGGGGGGACGGGc -3' miRNA: 3'- aCCCGGaCCUCggGCCUCUUUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 59112 | 0.71 | 0.613167 |
Target: 5'- gGcGGCCUGGAGCCa-GAGAugcGCGAAc -3' miRNA: 3'- aC-CCGGACCUCGGgcCUCUu--UGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 34741 | 0.71 | 0.633994 |
Target: 5'- cGGGCCcgGGAgcggggcgGCCCGGgagggagaAGAAACGGAAc -3' miRNA: 3'- aCCCGGa-CCU--------CGGGCC--------UCUUUGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 141202 | 0.7 | 0.643368 |
Target: 5'- cUGGGCCcgcgggacgGGGGCCCGGAcGAcuuccccGACGAc- -3' miRNA: 3'- -ACCCGGa--------CCUCGGGCCU-CU-------UUGUUuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 93477 | 0.7 | 0.654814 |
Target: 5'- aGGGCCacgUGGuGCCCGGguacgAGggGCGc-- -3' miRNA: 3'- aCCCGG---ACCuCGGGCC-----UCuuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 115179 | 0.7 | 0.685881 |
Target: 5'- cUGGucuuCCUGGAgGCCCuGGAGAGACGc-- -3' miRNA: 3'- -ACCc---GGACCU-CGGG-CCUCUUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 73249 | 0.69 | 0.716533 |
Target: 5'- gGGGCCcccGGGGaCCUGGAGGccCAAGAu -3' miRNA: 3'- aCCCGGa--CCUC-GGGCCUCUuuGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 43681 | 0.69 | 0.716533 |
Target: 5'- gGGGUCgUGGguggucacGGCCCGGAGAuGCGu-- -3' miRNA: 3'- aCCCGG-ACC--------UCGGGCCUCUuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 58884 | 0.69 | 0.716533 |
Target: 5'- cGGGCCcGGAaccCCCGGAGgcGCGc-- -3' miRNA: 3'- aCCCGGaCCUc--GGGCCUCuuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 15056 | 0.69 | 0.726613 |
Target: 5'- aUGGGCCcGGGGCgCgCGGGGGGugGu-- -3' miRNA: 3'- -ACCCGGaCCUCG-G-GCCUCUUugUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 126599 | 0.69 | 0.726613 |
Target: 5'- gGGGCCcgcagcuucgGGGGCUCGGGGGgguacGGCGAGGu -3' miRNA: 3'- aCCCGGa---------CCUCGGGCCUCU-----UUGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 41378 | 0.69 | 0.726613 |
Target: 5'- aUGGcGCCggGGAugGCCgGGAGGGACAc-- -3' miRNA: 3'- -ACC-CGGa-CCU--CGGgCCUCUUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 135473 | 0.69 | 0.736609 |
Target: 5'- gGGGCUguucaacgUGGAcCCCGGGGAcGCGGAc -3' miRNA: 3'- aCCCGG--------ACCUcGGGCCUCUuUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 9099 | 0.69 | 0.746511 |
Target: 5'- aGGGCCacgGGAaagGCCgCGGGGGAGCc--- -3' miRNA: 3'- aCCCGGa--CCU---CGG-GCCUCUUUGuuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 83790 | 0.68 | 0.75631 |
Target: 5'- gGGGCCcggacgcGGGGCCCGGA---ACAAc- -3' miRNA: 3'- aCCCGGa------CCUCGGGCCUcuuUGUUuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 154163 | 0.68 | 0.765994 |
Target: 5'- cUGGGCUcGGcguaGGCCCGGAGccgGAGCGc-- -3' miRNA: 3'- -ACCCGGaCC----UCGGGCCUC---UUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 41441 | 0.68 | 0.784047 |
Target: 5'- cGGGCgUGGGggguccaugccccGCCgGGGGggGCGGu- -3' miRNA: 3'- aCCCGgACCU-------------CGGgCCUCuuUGUUuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 79949 | 0.68 | 0.794269 |
Target: 5'- cUGGGCUgGGcGUCCGGAGcgGCGGc- -3' miRNA: 3'- -ACCCGGaCCuCGGGCCUCuuUGUUuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 22151 | 0.68 | 0.794269 |
Target: 5'- gGGGCCaacgGGAGCgCGGGGccGGCAu-- -3' miRNA: 3'- aCCCGGa---CCUCGgGCCUCu-UUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 57432 | 0.68 | 0.79519 |
Target: 5'- cGGGCUccgaggaugucuucgGGGGCCCGGucuugGGggGCGGGg -3' miRNA: 3'- aCCCGGa--------------CCUCGGGCC-----UCuuUGUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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