Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5340 | 5' | -56 | NC_001798.1 | + | 74087 | 0.67 | 0.809703 |
Target: 5'- gUGGGCUucuucggGGAGCCCacggcggggcugcuGGAGAcGCAAu- -3' miRNA: 3'- -ACCCGGa------CCUCGGG--------------CCUCUuUGUUuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 20511 | 0.67 | 0.812378 |
Target: 5'- -uGGCC-GGGGCCUGGGGuuGCGc-- -3' miRNA: 3'- acCCGGaCCUCGGGCCUCuuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 150562 | 0.67 | 0.812378 |
Target: 5'- aGcGGCCcGGGGCCCGcGGGGcggcGCGGAGa -3' miRNA: 3'- aC-CCGGaCCUCGGGC-CUCUu---UGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 102426 | 0.67 | 0.821182 |
Target: 5'- cUGGGCCuccaggggacUGGGGCCCGcGAacAGCAu-- -3' miRNA: 3'- -ACCCGG----------ACCUCGGGC-CUcuUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 39476 | 0.67 | 0.829808 |
Target: 5'- gGGGCCUGGcgcgugccucguGGCCgCGGgcccccGGAGACGu-- -3' miRNA: 3'- aCCCGGACC------------UCGG-GCC------UCUUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 152187 | 0.67 | 0.838248 |
Target: 5'- gGGGCCU-GAGaCCCGGGGGu------ -3' miRNA: 3'- aCCCGGAcCUC-GGGCCUCUuuguuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 128954 | 0.67 | 0.838248 |
Target: 5'- cGGGCgCguuccGGGCCCGGAGGAGg---- -3' miRNA: 3'- aCCCG-Gac---CUCGGGCCUCUUUguuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 21804 | 0.67 | 0.838248 |
Target: 5'- cGGGCCcgccucggggcGGAGCCCGcGGGAuGACGc-- -3' miRNA: 3'- aCCCGGa----------CCUCGGGC-CUCU-UUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 132108 | 0.67 | 0.838248 |
Target: 5'- cGcGCCUGGGGCCC-GAGGuccuGCAGGc -3' miRNA: 3'- aCcCGGACCUCGGGcCUCUu---UGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 53880 | 0.67 | 0.838248 |
Target: 5'- gGGaGUCUGGAggGCCCGcGGAGACGu-- -3' miRNA: 3'- aCC-CGGACCU--CGGGCcUCUUUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 90086 | 0.67 | 0.846494 |
Target: 5'- gGGGCC-GGcaGGCCCcuGGAGGCGAGAu -3' miRNA: 3'- aCCCGGaCC--UCGGGccUCUUUGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 14953 | 0.67 | 0.846494 |
Target: 5'- gGGGUgUGGGGCCC-GAGGcauguccuuAGCGGGAg -3' miRNA: 3'- aCCCGgACCUCGGGcCUCU---------UUGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 61466 | 0.66 | 0.854538 |
Target: 5'- gGGGCCUccGGGcCCCGGAGGGc----- -3' miRNA: 3'- aCCCGGA--CCUcGGGCCUCUUuguuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 87977 | 0.66 | 0.854538 |
Target: 5'- gGGGCUUGGAcgcgccuCCCGGGGGgucGGCAu-- -3' miRNA: 3'- aCCCGGACCUc------GGGCCUCU---UUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 78944 | 0.66 | 0.860045 |
Target: 5'- cGaGGUCUGGGGUcgcuuuggccgcguCCGGGGggGCGc-- -3' miRNA: 3'- aC-CCGGACCUCG--------------GGCCUCuuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 38986 | 0.66 | 0.862374 |
Target: 5'- aGGGuCCUGGGGgC-GGAGcgGCAGAu -3' miRNA: 3'- aCCC-GGACCUCgGgCCUCuuUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 27165 | 0.66 | 0.862374 |
Target: 5'- gGGGCugCUGcGAGCUCGGGGccGCGGGc -3' miRNA: 3'- aCCCG--GAC-CUCGGGCCUCuuUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 102658 | 0.66 | 0.862374 |
Target: 5'- gGGGCCgGGGcGCCCGaugccGAAACGGGGu -3' miRNA: 3'- aCCCGGaCCU-CGGGCcu---CUUUGUUUU- -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 73066 | 0.66 | 0.862374 |
Target: 5'- gGGGCCUGGggggacuacAGCCUGGGGc------- -3' miRNA: 3'- aCCCGGACC---------UCGGGCCUCuuuguuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 4908 | 0.66 | 0.869242 |
Target: 5'- gGGGCCgccGGucgucuccgccgcGGCCCGGAGAc------ -3' miRNA: 3'- aCCCGGa--CC-------------UCGGGCCUCUuuguuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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