miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 124575 0.66 0.869994
Target:  5'- gGGGag-GGcGGCaCCGGGGAAACAGGc -3'
miRNA:   3'- aCCCggaCC-UCG-GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 153534 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 153572 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 153610 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 4908 0.66 0.869242
Target:  5'- gGGGCCgccGGucgucuccgccgcGGCCCGGAGAc------ -3'
miRNA:   3'- aCCCGGa--CC-------------UCGGGCCUCUuuguuuu -5'
5340 5' -56 NC_001798.1 + 38986 0.66 0.862374
Target:  5'- aGGGuCCUGGGGgC-GGAGcgGCAGAu -3'
miRNA:   3'- aCCC-GGACCUCgGgCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 27165 0.66 0.862374
Target:  5'- gGGGCugCUGcGAGCUCGGGGccGCGGGc -3'
miRNA:   3'- aCCCG--GAC-CUCGGGCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 73066 0.66 0.862374
Target:  5'- gGGGCCUGGggggacuacAGCCUGGGGc------- -3'
miRNA:   3'- aCCCGGACC---------UCGGGCCUCuuuguuuu -5'
5340 5' -56 NC_001798.1 + 102658 0.66 0.862374
Target:  5'- gGGGCCgGGGcGCCCGaugccGAAACGGGGu -3'
miRNA:   3'- aCCCGGaCCU-CGGGCcu---CUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 78944 0.66 0.860045
Target:  5'- cGaGGUCUGGGGUcgcuuuggccgcguCCGGGGggGCGc-- -3'
miRNA:   3'- aC-CCGGACCUCG--------------GGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 61466 0.66 0.854538
Target:  5'- gGGGCCUccGGGcCCCGGAGGGc----- -3'
miRNA:   3'- aCCCGGA--CCUcGGGCCUCUUuguuuu -5'
5340 5' -56 NC_001798.1 + 87977 0.66 0.854538
Target:  5'- gGGGCUUGGAcgcgccuCCCGGGGGgucGGCAu-- -3'
miRNA:   3'- aCCCGGACCUc------GGGCCUCU---UUGUuuu -5'
5340 5' -56 NC_001798.1 + 90086 0.67 0.846494
Target:  5'- gGGGCC-GGcaGGCCCcuGGAGGCGAGAu -3'
miRNA:   3'- aCCCGGaCC--UCGGGccUCUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 14953 0.67 0.846494
Target:  5'- gGGGUgUGGGGCCC-GAGGcauguccuuAGCGGGAg -3'
miRNA:   3'- aCCCGgACCUCGGGcCUCU---------UUGUUUU- -5'
5340 5' -56 NC_001798.1 + 53880 0.67 0.838248
Target:  5'- gGGaGUCUGGAggGCCCGcGGAGACGu-- -3'
miRNA:   3'- aCC-CGGACCU--CGGGCcUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 132108 0.67 0.838248
Target:  5'- cGcGCCUGGGGCCC-GAGGuccuGCAGGc -3'
miRNA:   3'- aCcCGGACCUCGGGcCUCUu---UGUUUu -5'
5340 5' -56 NC_001798.1 + 21804 0.67 0.838248
Target:  5'- cGGGCCcgccucggggcGGAGCCCGcGGGAuGACGc-- -3'
miRNA:   3'- aCCCGGa----------CCUCGGGC-CUCU-UUGUuuu -5'
5340 5' -56 NC_001798.1 + 128954 0.67 0.838248
Target:  5'- cGGGCgCguuccGGGCCCGGAGGAGg---- -3'
miRNA:   3'- aCCCG-Gac---CUCGGGCCUCUUUguuuu -5'
5340 5' -56 NC_001798.1 + 152187 0.67 0.838248
Target:  5'- gGGGCCU-GAGaCCCGGGGGu------ -3'
miRNA:   3'- aCCCGGAcCUC-GGGCCUCUuuguuuu -5'
5340 5' -56 NC_001798.1 + 39476 0.67 0.829808
Target:  5'- gGGGCCUGGcgcgugccucguGGCCgCGGgcccccGGAGACGu-- -3'
miRNA:   3'- aCCCGGACC------------UCGG-GCC------UCUUUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.