miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 102426 0.67 0.821182
Target:  5'- cUGGGCCuccaggggacUGGGGCCCGcGAacAGCAu-- -3'
miRNA:   3'- -ACCCGG----------ACCUCGGGC-CUcuUUGUuuu -5'
5340 5' -56 NC_001798.1 + 20511 0.67 0.812378
Target:  5'- -uGGCC-GGGGCCUGGGGuuGCGc-- -3'
miRNA:   3'- acCCGGaCCUCGGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 150562 0.67 0.812378
Target:  5'- aGcGGCCcGGGGCCCGcGGGGcggcGCGGAGa -3'
miRNA:   3'- aC-CCGGaCCUCGGGC-CUCUu---UGUUUU- -5'
5340 5' -56 NC_001798.1 + 74087 0.67 0.809703
Target:  5'- gUGGGCUucuucggGGAGCCCacggcggggcugcuGGAGAcGCAAu- -3'
miRNA:   3'- -ACCCGGa------CCUCGGG--------------CCUCUuUGUUuu -5'
5340 5' -56 NC_001798.1 + 57432 0.68 0.79519
Target:  5'- cGGGCUccgaggaugucuucgGGGGCCCGGucuugGGggGCGGGg -3'
miRNA:   3'- aCCCGGa--------------CCUCGGGCC-----UCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 22151 0.68 0.794269
Target:  5'- gGGGCCaacgGGAGCgCGGGGccGGCAu-- -3'
miRNA:   3'- aCCCGGa---CCUCGgGCCUCu-UUGUuuu -5'
5340 5' -56 NC_001798.1 + 79949 0.68 0.794269
Target:  5'- cUGGGCUgGGcGUCCGGAGcgGCGGc- -3'
miRNA:   3'- -ACCCGGaCCuCGGGCCUCuuUGUUuu -5'
5340 5' -56 NC_001798.1 + 41441 0.68 0.784047
Target:  5'- cGGGCgUGGGggguccaugccccGCCgGGGGggGCGGu- -3'
miRNA:   3'- aCCCGgACCU-------------CGGgCCUCuuUGUUuu -5'
5340 5' -56 NC_001798.1 + 154163 0.68 0.765994
Target:  5'- cUGGGCUcGGcguaGGCCCGGAGccgGAGCGc-- -3'
miRNA:   3'- -ACCCGGaCC----UCGGGCCUC---UUUGUuuu -5'
5340 5' -56 NC_001798.1 + 83790 0.68 0.75631
Target:  5'- gGGGCCcggacgcGGGGCCCGGA---ACAAc- -3'
miRNA:   3'- aCCCGGa------CCUCGGGCCUcuuUGUUuu -5'
5340 5' -56 NC_001798.1 + 9099 0.69 0.746511
Target:  5'- aGGGCCacgGGAaagGCCgCGGGGGAGCc--- -3'
miRNA:   3'- aCCCGGa--CCU---CGG-GCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 135473 0.69 0.736609
Target:  5'- gGGGCUguucaacgUGGAcCCCGGGGAcGCGGAc -3'
miRNA:   3'- aCCCGG--------ACCUcGGGCCUCUuUGUUUu -5'
5340 5' -56 NC_001798.1 + 41378 0.69 0.726613
Target:  5'- aUGGcGCCggGGAugGCCgGGAGGGACAc-- -3'
miRNA:   3'- -ACC-CGGa-CCU--CGGgCCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 126599 0.69 0.726613
Target:  5'- gGGGCCcgcagcuucgGGGGCUCGGGGGgguacGGCGAGGu -3'
miRNA:   3'- aCCCGGa---------CCUCGGGCCUCU-----UUGUUUU- -5'
5340 5' -56 NC_001798.1 + 15056 0.69 0.726613
Target:  5'- aUGGGCCcGGGGCgCgCGGGGGGugGu-- -3'
miRNA:   3'- -ACCCGGaCCUCG-G-GCCUCUUugUuuu -5'
5340 5' -56 NC_001798.1 + 58884 0.69 0.716533
Target:  5'- cGGGCCcGGAaccCCCGGAGgcGCGc-- -3'
miRNA:   3'- aCCCGGaCCUc--GGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 73249 0.69 0.716533
Target:  5'- gGGGCCcccGGGGaCCUGGAGGccCAAGAu -3'
miRNA:   3'- aCCCGGa--CCUC-GGGCCUCUuuGUUUU- -5'
5340 5' -56 NC_001798.1 + 43681 0.69 0.716533
Target:  5'- gGGGUCgUGGguggucacGGCCCGGAGAuGCGu-- -3'
miRNA:   3'- aCCCGG-ACC--------UCGGGCCUCUuUGUuuu -5'
5340 5' -56 NC_001798.1 + 115179 0.7 0.685881
Target:  5'- cUGGucuuCCUGGAgGCCCuGGAGAGACGc-- -3'
miRNA:   3'- -ACCc---GGACCU-CGGG-CCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 93477 0.7 0.654814
Target:  5'- aGGGCCacgUGGuGCCCGGguacgAGggGCGc-- -3'
miRNA:   3'- aCCCGG---ACCuCGGGCC-----UCuuUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.