miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 4908 0.66 0.869242
Target:  5'- gGGGCCgccGGucgucuccgccgcGGCCCGGAGAc------ -3'
miRNA:   3'- aCCCGGa--CC-------------UCGGGCCUCUuuguuuu -5'
5340 5' -56 NC_001798.1 + 6266 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6305 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6344 0.73 0.521017
Target:  5'- cGGGCCggGGGGacgggCCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGa-CCUCg----GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6394 0.81 0.181337
Target:  5'- gGGGCCgGGGGgCCGGGGGGACGGGGg -3'
miRNA:   3'- aCCCGGaCCUCgGGCCUCUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 6543 0.71 0.592399
Target:  5'- cGGGCCgGGGGgaCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGaCCUCggGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 6585 0.71 0.592399
Target:  5'- cGGGCCgGGGGgaCGGGGGGACGGGc -3'
miRNA:   3'- aCCCGGaCCUCggGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 8221 0.66 0.890824
Target:  5'- aUGGGUccuucguCUGGAGCCCGuacccggcaGAGAGAUu--- -3'
miRNA:   3'- -ACCCG-------GACCUCGGGC---------CUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 9099 0.69 0.746511
Target:  5'- aGGGCCacgGGAaagGCCgCGGGGGAGCc--- -3'
miRNA:   3'- aCCCGGa--CCU---CGG-GCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 14953 0.67 0.846494
Target:  5'- gGGGUgUGGGGCCC-GAGGcauguccuuAGCGGGAg -3'
miRNA:   3'- aCCCGgACCUCGGGcCUCU---------UUGUUUU- -5'
5340 5' -56 NC_001798.1 + 15056 0.69 0.726613
Target:  5'- aUGGGCCcGGGGCgCgCGGGGGGugGu-- -3'
miRNA:   3'- -ACCCGGaCCUCG-G-GCCUCUUugUuuu -5'
5340 5' -56 NC_001798.1 + 15199 0.71 0.592399
Target:  5'- gGGGgCUGGcgAGCCgGGGGGAGCGu-- -3'
miRNA:   3'- aCCCgGACC--UCGGgCCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 15941 0.73 0.481731
Target:  5'- aGGGCCccgGGGGCCCaauGGGGcgGCAGAc -3'
miRNA:   3'- aCCCGGa--CCUCGGG---CCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 19729 0.66 0.876664
Target:  5'- cGGGCUgGGGGUcccgcgcucauggCCGGAGAAAUg--- -3'
miRNA:   3'- aCCCGGaCCUCG-------------GGCCUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 20511 0.67 0.812378
Target:  5'- -uGGCC-GGGGCCUGGGGuuGCGc-- -3'
miRNA:   3'- acCCGGaCCUCGGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 21804 0.67 0.838248
Target:  5'- cGGGCCcgccucggggcGGAGCCCGcGGGAuGACGc-- -3'
miRNA:   3'- aCCCGGa----------CCUCGGGC-CUCU-UUGUuuu -5'
5340 5' -56 NC_001798.1 + 22151 0.68 0.794269
Target:  5'- gGGGCCaacgGGAGCgCGGGGccGGCAu-- -3'
miRNA:   3'- aCCCGGa---CCUCGgGCCUCu-UUGUuuu -5'
5340 5' -56 NC_001798.1 + 24896 0.66 0.884566
Target:  5'- gGGGcCCUGG-GCCCGGcgcuGccGCGGAGc -3'
miRNA:   3'- aCCC-GGACCuCGGGCCu---CuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 27165 0.66 0.862374
Target:  5'- gGGGCugCUGcGAGCUCGGGGccGCGGGc -3'
miRNA:   3'- aCCCG--GAC-CUCGGGCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 28706 0.66 0.884566
Target:  5'- cGuGCCUGGAGCCC-GAGGccCGAGc -3'
miRNA:   3'- aCcCGGACCUCGGGcCUCUuuGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.