miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 102658 0.66 0.862374
Target:  5'- gGGGCCgGGGcGCCCGaugccGAAACGGGGu -3'
miRNA:   3'- aCCCGGaCCU-CGGGCcu---CUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 106746 0.76 0.365451
Target:  5'- gGGGCCUccGGAGCCCGcGGGGAucCGGAGc -3'
miRNA:   3'- aCCCGGA--CCUCGGGC-CUCUUu-GUUUU- -5'
5340 5' -56 NC_001798.1 + 109362 0.74 0.462631
Target:  5'- -cGGCCUGGccGCCCGGGGAGcaGCGGGc -3'
miRNA:   3'- acCCGGACCu-CGGGCCUCUU--UGUUUu -5'
5340 5' -56 NC_001798.1 + 111605 0.72 0.540115
Target:  5'- cGGGgcggccuCCUGGAGCCCcGGGGGcGGCAGAc -3'
miRNA:   3'- aCCC-------GGACCUCGGG-CCUCU-UUGUUUu -5'
5340 5' -56 NC_001798.1 + 115179 0.7 0.685881
Target:  5'- cUGGucuuCCUGGAgGCCCuGGAGAGACGc-- -3'
miRNA:   3'- -ACCc---GGACCU-CGGG-CCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 115842 0.73 0.501204
Target:  5'- gGGGCCUGGAGCUCGGcGuuGGCc--- -3'
miRNA:   3'- aCCCGGACCUCGGGCCuCu-UUGuuuu -5'
5340 5' -56 NC_001798.1 + 116187 0.66 0.869994
Target:  5'- cGGGCCcGGAGCUgGGc-GGGCAGGc -3'
miRNA:   3'- aCCCGGaCCUCGGgCCucUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 122094 0.79 0.221943
Target:  5'- cGGGCCUGGAgccGCCCGGcgGGggGCGc-- -3'
miRNA:   3'- aCCCGGACCU---CGGGCC--UCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 124575 0.66 0.869994
Target:  5'- gGGGag-GGcGGCaCCGGGGAAACAGGc -3'
miRNA:   3'- aCCCggaCC-UCG-GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 126599 0.69 0.726613
Target:  5'- gGGGCCcgcagcuucgGGGGCUCGGGGGgguacGGCGAGGu -3'
miRNA:   3'- aCCCGGa---------CCUCGGGCCUCU-----UUGUUUU- -5'
5340 5' -56 NC_001798.1 + 128954 0.67 0.838248
Target:  5'- cGGGCgCguuccGGGCCCGGAGGAGg---- -3'
miRNA:   3'- aCCCG-Gac---CUCGGGCCUCUUUguuuu -5'
5340 5' -56 NC_001798.1 + 129140 0.77 0.290128
Target:  5'- cGuGGCCUGGAGCuCCGGGGAGcugguucgccGCGAGc -3'
miRNA:   3'- aC-CCGGACCUCG-GGCCUCUU----------UGUUUu -5'
5340 5' -56 NC_001798.1 + 132108 0.67 0.838248
Target:  5'- cGcGCCUGGGGCCC-GAGGuccuGCAGGc -3'
miRNA:   3'- aCcCGGACCUCGGGcCUCUu---UGUUUu -5'
5340 5' -56 NC_001798.1 + 135233 0.71 0.582056
Target:  5'- cGGGCUgccGGaAGCCCGGGGGcgGGCGGGc -3'
miRNA:   3'- aCCCGGa--CC-UCGGGCCUCU--UUGUUUu -5'
5340 5' -56 NC_001798.1 + 135473 0.69 0.736609
Target:  5'- gGGGCUguucaacgUGGAcCCCGGGGAcGCGGAc -3'
miRNA:   3'- aCCCGG--------ACCUcGGGCCUCUuUGUUUu -5'
5340 5' -56 NC_001798.1 + 141202 0.7 0.643368
Target:  5'- cUGGGCCcgcgggacgGGGGCCCGGAcGAcuuccccGACGAc- -3'
miRNA:   3'- -ACCCGGa--------CCUCGGGCCU-CU-------UUGUUuu -5'
5340 5' -56 NC_001798.1 + 148084 0.66 0.877394
Target:  5'- cGGGCC-GGGGgCCGGGGccGCu--- -3'
miRNA:   3'- aCCCGGaCCUCgGGCCUCuuUGuuuu -5'
5340 5' -56 NC_001798.1 + 150562 0.67 0.812378
Target:  5'- aGcGGCCcGGGGCCCGcGGGGcggcGCGGAGa -3'
miRNA:   3'- aC-CCGGaCCUCGGGC-CUCUu---UGUUUU- -5'
5340 5' -56 NC_001798.1 + 152187 0.67 0.838248
Target:  5'- gGGGCCU-GAGaCCCGGGGGu------ -3'
miRNA:   3'- aCCCGGAcCUC-GGGCCUCUuuguuuu -5'
5340 5' -56 NC_001798.1 + 153534 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.