miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5340 5' -56 NC_001798.1 + 97518 0.66 0.884566
Target:  5'- cGGGCCgccgcGGAGga-GGGGggGCGGAGg -3'
miRNA:   3'- aCCCGGa----CCUCgggCCUCuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 28872 0.66 0.884566
Target:  5'- -cGGCCggcGGAGCCCcGGAGcucCGAAGg -3'
miRNA:   3'- acCCGGa--CCUCGGG-CCUCuuuGUUUU- -5'
5340 5' -56 NC_001798.1 + 45422 0.66 0.88945
Target:  5'- gGGGCUUGGAGCgaccgaggccccccCCGGGccuACGAGGg -3'
miRNA:   3'- aCCCGGACCUCG--------------GGCCUcuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 8221 0.66 0.890824
Target:  5'- aUGGGUccuucguCUGGAGCCCGuacccggcaGAGAGAUu--- -3'
miRNA:   3'- -ACCCG-------GACCUCGGGC---------CUCUUUGuuuu -5'
5340 5' -56 NC_001798.1 + 61038 0.66 0.891507
Target:  5'- gGGGCCgGGGGaCCC-GAGccACAGAGc -3'
miRNA:   3'- aCCCGGaCCUC-GGGcCUCuuUGUUUU- -5'
5340 5' -56 NC_001798.1 + 30152 0.66 0.877394
Target:  5'- cGGGCggGGGGCCggggugagGGAGGGACAc-- -3'
miRNA:   3'- aCCCGgaCCUCGGg-------CCUCUUUGUuuu -5'
5340 5' -56 NC_001798.1 + 59560 0.66 0.876664
Target:  5'- gGGGgCUGGGGCUCgcgucgccggucuGGAGGucGCGAAAg -3'
miRNA:   3'- aCCCgGACCUCGGG-------------CCUCUu-UGUUUU- -5'
5340 5' -56 NC_001798.1 + 38986 0.66 0.862374
Target:  5'- aGGGuCCUGGGGgC-GGAGcgGCAGAu -3'
miRNA:   3'- aCCC-GGACCUCgGgCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 27165 0.66 0.862374
Target:  5'- gGGGCugCUGcGAGCUCGGGGccGCGGGc -3'
miRNA:   3'- aCCCG--GAC-CUCGGGCCUCuuUGUUUu -5'
5340 5' -56 NC_001798.1 + 73066 0.66 0.862374
Target:  5'- gGGGCCUGGggggacuacAGCCUGGGGc------- -3'
miRNA:   3'- aCCCGGACC---------UCGGGCCUCuuuguuuu -5'
5340 5' -56 NC_001798.1 + 102658 0.66 0.862374
Target:  5'- gGGGCCgGGGcGCCCGaugccGAAACGGGGu -3'
miRNA:   3'- aCCCGGaCCU-CGGGCcu---CUUUGUUUU- -5'
5340 5' -56 NC_001798.1 + 4908 0.66 0.869242
Target:  5'- gGGGCCgccGGucgucuccgccgcGGCCCGGAGAc------ -3'
miRNA:   3'- aCCCGGa--CC-------------UCGGGCCUCUuuguuuu -5'
5340 5' -56 NC_001798.1 + 89192 0.66 0.869994
Target:  5'- gUGGGCCUGGAuGaugCUGGGGuacaggcuGGCAAAGu -3'
miRNA:   3'- -ACCCGGACCU-Cg--GGCCUCu-------UUGUUUU- -5'
5340 5' -56 NC_001798.1 + 31799 0.66 0.869994
Target:  5'- aGGGCC-GG-GCgCGGAGGGAgGAc- -3'
miRNA:   3'- aCCCGGaCCuCGgGCCUCUUUgUUuu -5'
5340 5' -56 NC_001798.1 + 116187 0.66 0.869994
Target:  5'- cGGGCCcGGAGCUgGGc-GGGCAGGc -3'
miRNA:   3'- aCCCGGaCCUCGGgCCucUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 124575 0.66 0.869994
Target:  5'- gGGGag-GGcGGCaCCGGGGAAACAGGc -3'
miRNA:   3'- aCCCggaCC-UCG-GGCCUCUUUGUUUu -5'
5340 5' -56 NC_001798.1 + 153534 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 153572 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 153610 0.66 0.869994
Target:  5'- gGGGCgUcaGGGGgUCGGAGggGCGu-- -3'
miRNA:   3'- aCCCGgA--CCUCgGGCCUCuuUGUuuu -5'
5340 5' -56 NC_001798.1 + 19729 0.66 0.876664
Target:  5'- cGGGCUgGGGGUcccgcgcucauggCCGGAGAAAUg--- -3'
miRNA:   3'- aCCCGGaCCUCG-------------GGCCUCUUUGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.