Results 81 - 84 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5340 | 5' | -56 | NC_001798.1 | + | 27165 | 0.66 | 0.862374 |
Target: 5'- gGGGCugCUGcGAGCUCGGGGccGCGGGc -3' miRNA: 3'- aCCCG--GAC-CUCGGGCCUCuuUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 38986 | 0.66 | 0.862374 |
Target: 5'- aGGGuCCUGGGGgC-GGAGcgGCAGAu -3' miRNA: 3'- aCCC-GGACCUCgGgCCUCuuUGUUUu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 78944 | 0.66 | 0.860045 |
Target: 5'- cGaGGUCUGGGGUcgcuuuggccgcguCCGGGGggGCGc-- -3' miRNA: 3'- aC-CCGGACCUCG--------------GGCCUCuuUGUuuu -5' |
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5340 | 5' | -56 | NC_001798.1 | + | 20511 | 0.67 | 0.812378 |
Target: 5'- -uGGCC-GGGGCCUGGGGuuGCGc-- -3' miRNA: 3'- acCCGGaCCUCGGGCCUCuuUGUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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