miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5345 5' -52.4 NC_001798.1 + 4341 0.66 0.98562
Target:  5'- uGAGUcAgAGgcGGCCgAGCGcCGGCGg -3'
miRNA:   3'- gCUCA-UgUCaaCCGGgUUGCaGCUGU- -5'
5345 5' -52.4 NC_001798.1 + 104059 0.66 0.977344
Target:  5'- gCGGGUGCGGUUGaugaGCuCCAGCG-CGGu- -3'
miRNA:   3'- -GCUCAUGUCAAC----CG-GGUUGCaGCUgu -5'
5345 5' -52.4 NC_001798.1 + 17548 0.67 0.974815
Target:  5'- gGAGaccGCGGUuaucuguaggUGGCCCAACGgaGACGg -3'
miRNA:   3'- gCUCa--UGUCA----------ACCGGGUUGCagCUGU- -5'
5345 5' -52.4 NC_001798.1 + 7978 0.67 0.969152
Target:  5'- -uGGUGCuuUUGGCgCAcGCGUCGACGu -3'
miRNA:   3'- gcUCAUGucAACCGgGU-UGCAGCUGU- -5'
5345 5' -52.4 NC_001798.1 + 15837 0.67 0.962634
Target:  5'- -cGGUuCGGggGGCCCgAACGUCGGg- -3'
miRNA:   3'- gcUCAuGUCaaCCGGG-UUGCAGCUgu -5'
5345 5' -52.4 NC_001798.1 + 116110 0.67 0.96158
Target:  5'- gGAGUGCAuggccGUguaucgggaccuggUGGCCC-ACGUCGAg- -3'
miRNA:   3'- gCUCAUGU-----CA--------------ACCGGGuUGCAGCUgu -5'
5345 5' -52.4 NC_001798.1 + 70309 0.68 0.955215
Target:  5'- uCGGGcgcgGCGGUcGGCCCGGCGgaGGCGc -3'
miRNA:   3'- -GCUCa---UGUCAaCCGGGUUGCagCUGU- -5'
5345 5' -52.4 NC_001798.1 + 120969 0.68 0.955215
Target:  5'- cCGGGcgaauaaAGUUGGCCU--CGUCGACGa -3'
miRNA:   3'- -GCUCaug----UCAACCGGGuuGCAGCUGU- -5'
5345 5' -52.4 NC_001798.1 + 37482 0.69 0.937528
Target:  5'- gCGAGaGCuGUaccgGGCCCAACGcgCGGCc -3'
miRNA:   3'- -GCUCaUGuCAa---CCGGGUUGCa-GCUGu -5'
5345 5' -52.4 NC_001798.1 + 111589 0.69 0.927215
Target:  5'- uGA--GCGGggGGCCCGGCGgggCGGCc -3'
miRNA:   3'- gCUcaUGUCaaCCGGGUUGCa--GCUGu -5'
5345 5' -52.4 NC_001798.1 + 53942 0.69 0.91591
Target:  5'- aCGGGcucgaUGCAGUgcaUGGCCCuGCGggCGGCGg -3'
miRNA:   3'- -GCUC-----AUGUCA---ACCGGGuUGCa-GCUGU- -5'
5345 5' -52.4 NC_001798.1 + 26505 0.7 0.903619
Target:  5'- gCGGGgACGGUgcUGGCCgCGGCGggCGGCGg -3'
miRNA:   3'- -GCUCaUGUCA--ACCGG-GUUGCa-GCUGU- -5'
5345 5' -52.4 NC_001798.1 + 150038 0.7 0.890359
Target:  5'- cCGAGUcCGG--GGCCCGGCG-CGGCGc -3'
miRNA:   3'- -GCUCAuGUCaaCCGGGUUGCaGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.