miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5346 5' -54.2 NC_001798.1 + 83764 0.66 0.959441
Target:  5'- cCCGC-CGCCA-GCaacagaagCGCCGGggGg -3'
miRNA:   3'- -GGUGuGCGGUgCGauua----GCGGCCuuU- -5'
5346 5' -54.2 NC_001798.1 + 109777 0.66 0.959441
Target:  5'- gUCGCGCGgcgacCCACGCcGAUCuCCGGGc- -3'
miRNA:   3'- -GGUGUGC-----GGUGCGaUUAGcGGCCUuu -5'
5346 5' -54.2 NC_001798.1 + 24763 0.66 0.959441
Target:  5'- nCUGCGCGCCugGCUGcgCGagcugCGGu-- -3'
miRNA:   3'- -GGUGUGCGGugCGAUuaGCg----GCCuuu -5'
5346 5' -54.2 NC_001798.1 + 25023 0.66 0.958704
Target:  5'- cUCGCuCGCCGCGCccgccuccgCGCCGcGGGAg -3'
miRNA:   3'- -GGUGuGCGGUGCGauua-----GCGGC-CUUU- -5'
5346 5' -54.2 NC_001798.1 + 16780 0.66 0.955662
Target:  5'- cCCgACcCGCCGCGU--GUCcCCGGAAGa -3'
miRNA:   3'- -GG-UGuGCGGUGCGauUAGcGGCCUUU- -5'
5346 5' -54.2 NC_001798.1 + 100052 0.66 0.955662
Target:  5'- aCCACauacaGCGCCACGUgAAUgacaUGCUGGGGc -3'
miRNA:   3'- -GGUG-----UGCGGUGCGaUUA----GCGGCCUUu -5'
5346 5' -54.2 NC_001798.1 + 32063 0.66 0.955662
Target:  5'- uCCGCggGCGCCGCGCccc-CGUCGGc-- -3'
miRNA:   3'- -GGUG--UGCGGUGCGauuaGCGGCCuuu -5'
5346 5' -54.2 NC_001798.1 + 78047 0.66 0.955662
Target:  5'- cCCugGCGCgGCuGCUGcgcAUCG-CGGAGGg -3'
miRNA:   3'- -GGugUGCGgUG-CGAU---UAGCgGCCUUU- -5'
5346 5' -54.2 NC_001798.1 + 54674 0.66 0.955271
Target:  5'- gCgGCGCGCC-CGCUcgcggcucagcgcGAggcCGCCGGGGu -3'
miRNA:   3'- -GgUGUGCGGuGCGA-------------UUa--GCGGCCUUu -5'
5346 5' -54.2 NC_001798.1 + 24492 0.66 0.954878
Target:  5'- gCCugaGCGCCGCGCccgccuccgCGCCGGc-- -3'
miRNA:   3'- -GGug-UGCGGUGCGauua-----GCGGCCuuu -5'
5346 5' -54.2 NC_001798.1 + 24395 0.66 0.954482
Target:  5'- gCCGC-CGCCcCGUUGccgucggcggcggcGUCGCCGGc-- -3'
miRNA:   3'- -GGUGuGCGGuGCGAU--------------UAGCGGCCuuu -5'
5346 5' -54.2 NC_001798.1 + 25987 0.66 0.954482
Target:  5'- gCCGCACcgugcuggccuccgGCCGCGUgu-UCggGCCGGggGu -3'
miRNA:   3'- -GGUGUG--------------CGGUGCGauuAG--CGGCCuuU- -5'
5346 5' -54.2 NC_001798.1 + 9658 0.66 0.951649
Target:  5'- -aGCGgGCCGCGCgcgGAgggCGCgGGAu- -3'
miRNA:   3'- ggUGUgCGGUGCGa--UUa--GCGgCCUuu -5'
5346 5' -54.2 NC_001798.1 + 115862 0.66 0.951649
Target:  5'- -gGC-CGCCACGCcauggCGCCGGc-- -3'
miRNA:   3'- ggUGuGCGGUGCGauua-GCGGCCuuu -5'
5346 5' -54.2 NC_001798.1 + 26278 0.66 0.951649
Target:  5'- aCCGCGC-CUGCGCg---CGCUGGGGc -3'
miRNA:   3'- -GGUGUGcGGUGCGauuaGCGGCCUUu -5'
5346 5' -54.2 NC_001798.1 + 125744 0.66 0.951649
Target:  5'- aCGC-CGCCACGCggcccugCGCCGa--- -3'
miRNA:   3'- gGUGuGCGGUGCGauua---GCGGCcuuu -5'
5346 5' -54.2 NC_001798.1 + 134082 0.66 0.951649
Target:  5'- -gGCGCGCgCGCGCU--UCG-CGGAGGu -3'
miRNA:   3'- ggUGUGCG-GUGCGAuuAGCgGCCUUU- -5'
5346 5' -54.2 NC_001798.1 + 149984 0.66 0.951649
Target:  5'- gCGCgGCGCC-CGCgga-CGCCGGGGc -3'
miRNA:   3'- gGUG-UGCGGuGCGauuaGCGGCCUUu -5'
5346 5' -54.2 NC_001798.1 + 437 0.66 0.951649
Target:  5'- cCCGCGCGCCACgggGCUGcgGUC-CCGcGGc- -3'
miRNA:   3'- -GGUGUGCGGUG---CGAU--UAGcGGC-CUuu -5'
5346 5' -54.2 NC_001798.1 + 25292 0.66 0.949979
Target:  5'- gCCACACGCCGgCGCccucggccgcCGCCcuGGAGg -3'
miRNA:   3'- -GGUGUGCGGU-GCGauua------GCGG--CCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.