miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5350 5' -56.1 NC_001798.1 + 132549 0.66 0.916567
Target:  5'- --gGUCCGgggcGCGCUcgGAGCCCGUcuUUACGc -3'
miRNA:   3'- acaCGGGC----UGCGG--CUCGGGUA--AAUGC- -5'
5350 5' -56.1 NC_001798.1 + 127924 0.66 0.916567
Target:  5'- cGUGggcaaCCCGACgGCgGGGCCCcgg-GCGa -3'
miRNA:   3'- aCAC-----GGGCUG-CGgCUCGGGuaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 116317 0.66 0.916567
Target:  5'- -cUGCCggauUGACGCgggggggcaCGAGCCCGUcUACGc -3'
miRNA:   3'- acACGG----GCUGCG---------GCUCGGGUAaAUGC- -5'
5350 5' -56.1 NC_001798.1 + 111030 0.66 0.916567
Target:  5'- --cGUCCGugGCCGGcguacaacacGCCCAggaACGc -3'
miRNA:   3'- acaCGGGCugCGGCU----------CGGGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 103728 0.66 0.916567
Target:  5'- cGUGUccgCCGACGuCCGGGCCgGg--ACu -3'
miRNA:   3'- aCACG---GGCUGC-GGCUCGGgUaaaUGc -5'
5350 5' -56.1 NC_001798.1 + 54782 0.66 0.910706
Target:  5'- cUGcUGCCCGAcgaugaCGCCGccauGCCCGcggGCGu -3'
miRNA:   3'- -AC-ACGGGCU------GCGGCu---CGGGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 1223 0.66 0.910706
Target:  5'- --gGCCCG-CgGCCGAcGCCCAgcguaucUGCGg -3'
miRNA:   3'- acaCGGGCuG-CGGCU-CGGGUaa-----AUGC- -5'
5350 5' -56.1 NC_001798.1 + 103017 0.66 0.910706
Target:  5'- --nGCCCGGCcaGCgCGAGCUCGgccucgGCGg -3'
miRNA:   3'- acaCGGGCUG--CG-GCUCGGGUaaa---UGC- -5'
5350 5' -56.1 NC_001798.1 + 151611 0.66 0.910706
Target:  5'- --gGCCgGGgGCCGGGCCgGgg-GCGu -3'
miRNA:   3'- acaCGGgCUgCGGCUCGGgUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 47668 0.66 0.910706
Target:  5'- --cGCCgCGGCGCUG-GCCCGa-UGCGc -3'
miRNA:   3'- acaCGG-GCUGCGGCuCGGGUaaAUGC- -5'
5350 5' -56.1 NC_001798.1 + 37010 0.66 0.90461
Target:  5'- gUGUGgCCGGCGCgagcgCGGGCCaGUUUGuCGu -3'
miRNA:   3'- -ACACgGGCUGCG-----GCUCGGgUAAAU-GC- -5'
5350 5' -56.1 NC_001798.1 + 150986 0.66 0.90461
Target:  5'- aGUGCCCGAC-CCccGCCCGa----- -3'
miRNA:   3'- aCACGGGCUGcGGcuCGGGUaaaugc -5'
5350 5' -56.1 NC_001798.1 + 119235 0.66 0.90461
Target:  5'- -cUGCUCG-CGCUGAgcGCCCAgg-ACGg -3'
miRNA:   3'- acACGGGCuGCGGCU--CGGGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 125701 0.66 0.90461
Target:  5'- --aGUCCGACGUCGGGCgCGc--GCGg -3'
miRNA:   3'- acaCGGGCUGCGGCUCGgGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 131349 0.66 0.90461
Target:  5'- --gGCgCGACGUCGGcGCCCGgc-GCGg -3'
miRNA:   3'- acaCGgGCUGCGGCU-CGGGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 65800 0.66 0.898281
Target:  5'- --aGCCCGAUGCC---CCCGUUgcggGCGa -3'
miRNA:   3'- acaCGGGCUGCGGcucGGGUAAa---UGC- -5'
5350 5' -56.1 NC_001798.1 + 153087 0.66 0.891723
Target:  5'- --gGCggggCGGCGCCGGGCCCuc--GCGg -3'
miRNA:   3'- acaCGg---GCUGCGGCUCGGGuaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 133463 0.66 0.891723
Target:  5'- --aGCgCGugGCCGAcGCCCuga-GCGg -3'
miRNA:   3'- acaCGgGCugCGGCU-CGGGuaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 130078 0.66 0.891723
Target:  5'- aUGgGCUCGGCGUCGggcacaGGCCCGgg-GCGu -3'
miRNA:   3'- -ACaCGGGCUGCGGC------UCGGGUaaaUGC- -5'
5350 5' -56.1 NC_001798.1 + 120231 0.66 0.891723
Target:  5'- uUG-GCCCc-CGCCGAGgCCAggaUGCGg -3'
miRNA:   3'- -ACaCGGGcuGCGGCUCgGGUaa-AUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.