miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 36487 0.67 0.892725
Target:  5'- --aGGGGGCGCCGgcgcGACGcGGGCgGCCg -3'
miRNA:   3'- cagCCCCUGCGGU----UUGUcUUCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 85679 0.67 0.892052
Target:  5'- -gCGGGGugcccggGCGCCAcgccCAGAAGCAaCCc -3'
miRNA:   3'- caGCCCC-------UGCGGUuu--GUCUUCGU-GGa -5'
5351 3' -55.5 NC_001798.1 + 124814 0.67 0.885891
Target:  5'- -cCGGaaGGACGCgagcgacagcgCGAugAGggGCACCa -3'
miRNA:   3'- caGCC--CCUGCG-----------GUUugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 154074 0.67 0.885891
Target:  5'- -nCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 2470 0.67 0.885891
Target:  5'- gGUCGGGGcccucggcGgGCC-GGCGGGucAGCGCCg -3'
miRNA:   3'- -CAGCCCC--------UgCGGuUUGUCU--UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 96578 0.67 0.885891
Target:  5'- -gCGGGGACGUCc-GCAuGGAGCugUg -3'
miRNA:   3'- caGCCCCUGCGGuuUGU-CUUCGugGa -5'
5351 3' -55.5 NC_001798.1 + 55983 0.67 0.885891
Target:  5'- -cCGGGGAgGCC--GCGGggGCGa-- -3'
miRNA:   3'- caGCCCCUgCGGuuUGUCuuCGUgga -5'
5351 3' -55.5 NC_001798.1 + 97492 0.67 0.885891
Target:  5'- -cCGGGGGgGCCGAGgAGGaagAGCcCCg -3'
miRNA:   3'- caGCCCCUgCGGUUUgUCU---UCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 128648 0.67 0.885891
Target:  5'- -cCGGGGAccuCGCCGAGgAGAAcguGCACg- -3'
miRNA:   3'- caGCCCCU---GCGGUUUgUCUU---CGUGga -5'
5351 3' -55.5 NC_001798.1 + 146828 0.68 0.81479
Target:  5'- -cCGGGGGCGCggCAGcaacgaacGCAGggGCccGCCg -3'
miRNA:   3'- caGCCCCUGCG--GUU--------UGUCuuCG--UGGa -5'
5351 3' -55.5 NC_001798.1 + 57561 0.68 0.823466
Target:  5'- -gCGGGGACGCgGAGgGGGcGGCAUUg -3'
miRNA:   3'- caGCCCCUGCGgUUUgUCU-UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 143981 0.68 0.838632
Target:  5'- cGUCGGGGuaacaauuuuuaacCGCCGccagcacguuccguaGACucGGAGGCACCg -3'
miRNA:   3'- -CAGCCCCu-------------GCGGU---------------UUG--UCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 46695 0.68 0.839457
Target:  5'- -gCGGGGGCGUgAAuaaucgcGCAGAAGUcCCg -3'
miRNA:   3'- caGCCCCUGCGgUU-------UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 22145 0.68 0.84028
Target:  5'- -cCGGcGGGgGCC-AACGGGAGCGCg- -3'
miRNA:   3'- caGCC-CCUgCGGuUUGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 39224 0.68 0.84028
Target:  5'- ---uGGGugGCCAGcACGGGAGC-CCa -3'
miRNA:   3'- cagcCCCugCGGUU-UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 74826 0.68 0.84028
Target:  5'- -cCGGGGACGCgGccgaAGAAGCcgagACCUg -3'
miRNA:   3'- caGCCCCUGCGgUuug-UCUUCG----UGGA- -5'
5351 3' -55.5 NC_001798.1 + 23732 0.68 0.848402
Target:  5'- gGUCGagcuGGACGCCGAcGCGGccuccGGCGCCUu -3'
miRNA:   3'- -CAGCc---CCUGCGGUU-UGUCu----UCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 66590 0.68 0.848402
Target:  5'- cUCGcGGGCGCaCcGACAGAAGUACUc -3'
miRNA:   3'- cAGCcCCUGCG-GuUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 132148 0.68 0.848402
Target:  5'- -cCGGGGGcCGgCGGGCGG-GGCGCCc -3'
miRNA:   3'- caGCCCCU-GCgGUUUGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 149246 0.68 0.81479
Target:  5'- -gCGGGGGCGUCGccggccggcGCGGgcGCGCCc -3'
miRNA:   3'- caGCCCCUGCGGUu--------UGUCuuCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.