Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 132148 | 0.68 | 0.848402 |
Target: 5'- -cCGGGGGcCGgCGGGCGG-GGCGCCc -3' miRNA: 3'- caGCCCCU-GCgGUUUGUCuUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 36439 | 0.68 | 0.851595 |
Target: 5'- gGUCGGGGuCGCgGcgggGAaggaaggaaagacccCGGAAGCGCCg -3' miRNA: 3'- -CAGCCCCuGCGgU----UU---------------GUCUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 69299 | 0.69 | 0.769054 |
Target: 5'- --gGGGGGCGCCGggGACGGucAGC-CCUc -3' miRNA: 3'- cagCCCCUGCGGU--UUGUCu-UCGuGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 47019 | 0.69 | 0.769054 |
Target: 5'- -cCGGGGAgcCGCCGAacgcgGCAGgcGCACg- -3' miRNA: 3'- caGCCCCU--GCGGUU-----UGUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 54923 | 0.69 | 0.769054 |
Target: 5'- aGUCGGuGGGCGagGAugGGggGCGCg- -3' miRNA: 3'- -CAGCC-CCUGCggUUugUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 66867 | 0.69 | 0.763335 |
Target: 5'- aGUCGccGGGGCGCCGGggcuugggaaaggccACGGggGCgggGCCg -3' miRNA: 3'- -CAGC--CCCUGCGGUU---------------UGUCuuCG---UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 15373 | 0.69 | 0.759498 |
Target: 5'- aUCGGccguGGGCGC--GGCGGAGGCGCCc -3' miRNA: 3'- cAGCC----CCUGCGguUUGUCUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 149966 | 0.69 | 0.769054 |
Target: 5'- -aCGGaGACGCC-GACGGggGCGCg- -3' miRNA: 3'- caGCCcCUGCGGuUUGUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 10668 | 0.69 | 0.777549 |
Target: 5'- cGUCGGGGGgGCCAcagcgccacccacGACGGgcGCaggggACCg -3' miRNA: 3'- -CAGCCCCUgCGGU-------------UUGUCuuCG-----UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 2612 | 0.69 | 0.778486 |
Target: 5'- -gCGcGGGGCGCCGccCGGcGGCGCCc -3' miRNA: 3'- caGC-CCCUGCGGUuuGUCuUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 71115 | 0.69 | 0.794209 |
Target: 5'- -cCGGGGACGCUgauggcgcgcgugcGGACGGAcGCgGCCg -3' miRNA: 3'- caGCCCCUGCGG--------------UUUGUCUuCG-UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 93286 | 0.69 | 0.796032 |
Target: 5'- cGUCGGGGcguaccuggcgcGCGCC--GCGGGccucgugGGCGCCa -3' miRNA: 3'- -CAGCCCC------------UGCGGuuUGUCU-------UCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 24467 | 0.69 | 0.796941 |
Target: 5'- -gCGGGGGugcuCGCCGccCuGggGCGCCUg -3' miRNA: 3'- caGCCCCU----GCGGUuuGuCuuCGUGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 102030 | 0.69 | 0.796941 |
Target: 5'- -gCGGGGugGUUggGCGGggGUcuCCg -3' miRNA: 3'- caGCCCCugCGGuuUGUCuuCGu-GGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 16541 | 0.69 | 0.796941 |
Target: 5'- cGUUGGGuGCGCCAAAUccgcguaccGGcGGCGCCa -3' miRNA: 3'- -CAGCCCcUGCGGUUUG---------UCuUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 52340 | 0.7 | 0.720223 |
Target: 5'- -cCGGGGucgugGCgGCCGAGCAcGAGGCGCUg -3' miRNA: 3'- caGCCCC-----UG-CGGUUUGU-CUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 97635 | 0.7 | 0.720223 |
Target: 5'- -aCGcGGGcCGCCGcggacguGCGGGAGCGCCg -3' miRNA: 3'- caGC-CCCuGCGGUu------UGUCUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 31150 | 0.7 | 0.740052 |
Target: 5'- -gCGGGGGCGgCGGuGCGGggGCgACCc -3' miRNA: 3'- caGCCCCUGCgGUU-UGUCuuCG-UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 3387 | 0.7 | 0.749828 |
Target: 5'- cGUCGGGGguucGCGCCc--CGGucAGCGCCg -3' miRNA: 3'- -CAGCCCC----UGCGGuuuGUCu-UCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 11459 | 0.7 | 0.710188 |
Target: 5'- -gCGGGGGCGCCuguauCGGcgcuGGCAUCUa -3' miRNA: 3'- caGCCCCUGCGGuuu--GUCu---UCGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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