miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 149246 0.68 0.81479
Target:  5'- -gCGGGGGCGUCGccggccggcGCGGgcGCGCCc -3'
miRNA:   3'- caGCCCCUGCGGUu--------UGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 57561 0.68 0.823466
Target:  5'- -gCGGGGACGCgGAGgGGGcGGCAUUg -3'
miRNA:   3'- caGCCCCUGCGgUUUgUCU-UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 143981 0.68 0.838632
Target:  5'- cGUCGGGGuaacaauuuuuaacCGCCGccagcacguuccguaGACucGGAGGCACCg -3'
miRNA:   3'- -CAGCCCCu-------------GCGGU---------------UUG--UCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 46695 0.68 0.839457
Target:  5'- -gCGGGGGCGUgAAuaaucgcGCAGAAGUcCCg -3'
miRNA:   3'- caGCCCCUGCGgUU-------UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 22145 0.68 0.84028
Target:  5'- -cCGGcGGGgGCC-AACGGGAGCGCg- -3'
miRNA:   3'- caGCC-CCUgCGGuUUGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 39224 0.68 0.84028
Target:  5'- ---uGGGugGCCAGcACGGGAGC-CCa -3'
miRNA:   3'- cagcCCCugCGGUU-UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 74826 0.68 0.84028
Target:  5'- -cCGGGGACGCgGccgaAGAAGCcgagACCUg -3'
miRNA:   3'- caGCCCCUGCGgUuug-UCUUCG----UGGA- -5'
5351 3' -55.5 NC_001798.1 + 23732 0.68 0.848402
Target:  5'- gGUCGagcuGGACGCCGAcGCGGccuccGGCGCCUu -3'
miRNA:   3'- -CAGCc---CCUGCGGUU-UGUCu----UCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 66590 0.68 0.848402
Target:  5'- cUCGcGGGCGCaCcGACAGAAGUACUc -3'
miRNA:   3'- cAGCcCCUGCG-GuUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 132148 0.68 0.848402
Target:  5'- -cCGGGGGcCGgCGGGCGG-GGCGCCc -3'
miRNA:   3'- caGCCCCU-GCgGUUUGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 36439 0.68 0.851595
Target:  5'- gGUCGGGGuCGCgGcgggGAaggaaggaaagacccCGGAAGCGCCg -3'
miRNA:   3'- -CAGCCCCuGCGgU----UU---------------GUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 113761 0.67 0.856324
Target:  5'- -gCGGGGGgGUauuaAGGCAGggGCAgCUc -3'
miRNA:   3'- caGCCCCUgCGg---UUUGUCuuCGUgGA- -5'
5351 3' -55.5 NC_001798.1 + 103554 0.67 0.856324
Target:  5'- -aUGGGcacCGCCcggucGGGCAGAGGCGCCUc -3'
miRNA:   3'- caGCCCcu-GCGG-----UUUGUCUUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 81093 0.67 0.856324
Target:  5'- --gGGGGACGUUcucGCGGcGAGCGCCg -3'
miRNA:   3'- cagCCCCUGCGGuu-UGUC-UUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 26220 0.67 0.86404
Target:  5'- -gCGGGcGACGCCAuGGCGcccGgcGCGCCg -3'
miRNA:   3'- caGCCC-CUGCGGU-UUGU---CuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 42196 0.67 0.86404
Target:  5'- -gCGGGG-CGUgAAAgUGGAAGCGCCg -3'
miRNA:   3'- caGCCCCuGCGgUUU-GUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 78029 0.67 0.86404
Target:  5'- uUCGGGucGACGCCGAGCcccuGGcgcGGCugCUg -3'
miRNA:   3'- cAGCCC--CUGCGGUUUGu---CU---UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 154050 0.67 0.86404
Target:  5'- -cCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 95568 0.67 0.86404
Target:  5'- -cUGGaGGugGCCcacgAGGCGGAGGC-CCUg -3'
miRNA:   3'- caGCC-CCugCGG----UUUGUCUUCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 94274 0.67 0.86404
Target:  5'- -aCGGGGuguuCGCCGGGCAGucggucgagGGGCGCa- -3'
miRNA:   3'- caGCCCCu---GCGGUUUGUC---------UUCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.