miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 149246 0.68 0.81479
Target:  5'- -gCGGGGGCGUCGccggccggcGCGGgcGCGCCc -3'
miRNA:   3'- caGCCCCUGCGGUu--------UGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 8950 0.68 0.81479
Target:  5'- -gCGGGGugGCCGc-CGGAccuuuauGCGCCUc -3'
miRNA:   3'- caGCCCCugCGGUuuGUCUu------CGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 24467 0.69 0.796941
Target:  5'- -gCGGGGGugcuCGCCGccCuGggGCGCCUg -3'
miRNA:   3'- caGCCCCU----GCGGUuuGuCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 102030 0.69 0.796941
Target:  5'- -gCGGGGugGUUggGCGGggGUcuCCg -3'
miRNA:   3'- caGCCCCugCGGuuUGUCuuCGu-GGa -5'
5351 3' -55.5 NC_001798.1 + 16541 0.69 0.796941
Target:  5'- cGUUGGGuGCGCCAAAUccgcguaccGGcGGCGCCa -3'
miRNA:   3'- -CAGCCCcUGCGGUUUG---------UCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 93286 0.69 0.796032
Target:  5'- cGUCGGGGcguaccuggcgcGCGCC--GCGGGccucgugGGCGCCa -3'
miRNA:   3'- -CAGCCCC------------UGCGGuuUGUCU-------UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 71115 0.69 0.794209
Target:  5'- -cCGGGGACGCUgauggcgcgcgugcGGACGGAcGCgGCCg -3'
miRNA:   3'- caGCCCCUGCGG--------------UUUGUCUuCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 2612 0.69 0.778486
Target:  5'- -gCGcGGGGCGCCGccCGGcGGCGCCc -3'
miRNA:   3'- caGC-CCCUGCGGUuuGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 10668 0.69 0.777549
Target:  5'- cGUCGGGGGgGCCAcagcgccacccacGACGGgcGCaggggACCg -3'
miRNA:   3'- -CAGCCCCUgCGGU-------------UUGUCuuCG-----UGGa -5'
5351 3' -55.5 NC_001798.1 + 54923 0.69 0.769054
Target:  5'- aGUCGGuGGGCGagGAugGGggGCGCg- -3'
miRNA:   3'- -CAGCC-CCUGCggUUugUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 47019 0.69 0.769054
Target:  5'- -cCGGGGAgcCGCCGAacgcgGCAGgcGCACg- -3'
miRNA:   3'- caGCCCCU--GCGGUU-----UGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 69299 0.69 0.769054
Target:  5'- --gGGGGGCGCCGggGACGGucAGC-CCUc -3'
miRNA:   3'- cagCCCCUGCGGU--UUGUCu-UCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 149966 0.69 0.769054
Target:  5'- -aCGGaGACGCC-GACGGggGCGCg- -3'
miRNA:   3'- caGCCcCUGCGGuUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 66867 0.69 0.763335
Target:  5'- aGUCGccGGGGCGCCGGggcuugggaaaggccACGGggGCgggGCCg -3'
miRNA:   3'- -CAGC--CCCUGCGGUU---------------UGUCuuCG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 15373 0.69 0.759498
Target:  5'- aUCGGccguGGGCGC--GGCGGAGGCGCCc -3'
miRNA:   3'- cAGCC----CCUGCGguUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 3387 0.7 0.749828
Target:  5'- cGUCGGGGguucGCGCCc--CGGucAGCGCCg -3'
miRNA:   3'- -CAGCCCC----UGCGGuuuGUCu-UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 91547 0.7 0.749828
Target:  5'- -cCGGGGuucgagaGCCAGugugugguguccGCGGggGCGCCg -3'
miRNA:   3'- caGCCCCug-----CGGUU------------UGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 31150 0.7 0.740052
Target:  5'- -gCGGGGGCGgCGGuGCGGggGCgACCc -3'
miRNA:   3'- caGCCCCUGCgGUU-UGUCuuCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 97635 0.7 0.720223
Target:  5'- -aCGcGGGcCGCCGcggacguGCGGGAGCGCCg -3'
miRNA:   3'- caGC-CCCuGCGGUu------UGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 52340 0.7 0.720223
Target:  5'- -cCGGGGucgugGCgGCCGAGCAcGAGGCGCUg -3'
miRNA:   3'- caGCCCC-----UG-CGGUUUGU-CUUCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.