Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 54923 | 0.69 | 0.769054 |
Target: 5'- aGUCGGuGGGCGagGAugGGggGCGCg- -3' miRNA: 3'- -CAGCC-CCUGCggUUugUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 55983 | 0.67 | 0.885891 |
Target: 5'- -cCGGGGAgGCC--GCGGggGCGa-- -3' miRNA: 3'- caGCCCCUgCGGuuUGUCuuCGUgga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 57561 | 0.68 | 0.823466 |
Target: 5'- -gCGGGGACGCgGAGgGGGcGGCAUUg -3' miRNA: 3'- caGCCCCUGCGgUUUgUCU-UCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 58218 | 0.67 | 0.871544 |
Target: 5'- uGUCGGGGAC-CaCAAACAucAGC-CCg -3' miRNA: 3'- -CAGCCCCUGcG-GUUUGUcuUCGuGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 59351 | 0.67 | 0.871544 |
Target: 5'- --gGGGGugGaaaGGACGGAGGCGCa- -3' miRNA: 3'- cagCCCCugCgg-UUUGUCUUCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 60393 | 0.71 | 0.669469 |
Target: 5'- cGUCGGGGuCGCCcuGGgGGAguAGUACCg -3' miRNA: 3'- -CAGCCCCuGCGGu-UUgUCU--UCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 63264 | 0.73 | 0.546433 |
Target: 5'- cGUCGGGGGCggggGCgGAauACAGggGCugCa -3' miRNA: 3'- -CAGCCCCUG----CGgUU--UGUCuuCGugGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 66590 | 0.68 | 0.848402 |
Target: 5'- cUCGcGGGCGCaCcGACAGAAGUACUc -3' miRNA: 3'- cAGCcCCUGCG-GuUUGUCUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 66867 | 0.69 | 0.763335 |
Target: 5'- aGUCGccGGGGCGCCGGggcuugggaaaggccACGGggGCgggGCCg -3' miRNA: 3'- -CAGC--CCCUGCGGUU---------------UGUCuuCG---UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 69299 | 0.69 | 0.769054 |
Target: 5'- --gGGGGGCGCCGggGACGGucAGC-CCUc -3' miRNA: 3'- cagCCCCUGCGGU--UUGUCu-UCGuGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 71115 | 0.69 | 0.794209 |
Target: 5'- -cCGGGGACGCUgauggcgcgcgugcGGACGGAcGCgGCCg -3' miRNA: 3'- caGCCCCUGCGG--------------UUUGUCUuCG-UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 71980 | 0.67 | 0.878829 |
Target: 5'- gGUCGGGGACGC---GCuGAGG-GCCa -3' miRNA: 3'- -CAGCCCCUGCGguuUGuCUUCgUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 73256 | 0.66 | 0.914204 |
Target: 5'- -cCGGGGACcuggaggcccaagauGCC-GGCGGuAGCACCc -3' miRNA: 3'- caGCCCCUG---------------CGGuUUGUCuUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 74826 | 0.68 | 0.84028 |
Target: 5'- -cCGGGGACGCgGccgaAGAAGCcgagACCUg -3' miRNA: 3'- caGCCCCUGCGgUuug-UCUUCG----UGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 76493 | 0.66 | 0.899327 |
Target: 5'- cUCGGGGcugGCCGAACuGcAGCGCUUc -3' miRNA: 3'- cAGCCCCug-CGGUUUGuCuUCGUGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 77403 | 0.66 | 0.899327 |
Target: 5'- gGUCGGcGGcCGCCGAccugguagucCAGgcGCGCCg -3' miRNA: 3'- -CAGCC-CCuGCGGUUu---------GUCuuCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 78029 | 0.67 | 0.86404 |
Target: 5'- uUCGGGucGACGCCGAGCcccuGGcgcGGCugCUg -3' miRNA: 3'- cAGCCC--CUGCGGUUUGu---CU---UCGugGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 78947 | 0.66 | 0.917707 |
Target: 5'- gGUCuGGGGuCGCUuuGGCcgcguccggGGggGCGCCUg -3' miRNA: 3'- -CAG-CCCCuGCGGu-UUG---------UCuuCGUGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 81093 | 0.67 | 0.856324 |
Target: 5'- --gGGGGACGUUcucGCGGcGAGCGCCg -3' miRNA: 3'- cagCCCCUGCGGuu-UGUC-UUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 84105 | 0.73 | 0.576851 |
Target: 5'- aUCGGccGGGCGuCCAGGCcGAGGCGCCc -3' miRNA: 3'- cAGCC--CCUGC-GGUUUGuCUUCGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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