miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 128648 0.67 0.885891
Target:  5'- -cCGGGGAccuCGCCGAGgAGAAcguGCACg- -3'
miRNA:   3'- caGCCCCU---GCGGUUUgUCUU---CGUGga -5'
5351 3' -55.5 NC_001798.1 + 124890 0.66 0.91182
Target:  5'- -aCGGuGGCGCgCuGGCGGAAGUGCCg -3'
miRNA:   3'- caGCCcCUGCG-GuUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 124814 0.67 0.885891
Target:  5'- -cCGGaaGGACGCgagcgacagcgCGAugAGggGCACCa -3'
miRNA:   3'- caGCC--CCUGCG-----------GUUugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 116521 0.66 0.917707
Target:  5'- -gCGGGGGCGCU--GCu---GCACCg -3'
miRNA:   3'- caGCCCCUGCGGuuUGucuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 113761 0.67 0.856324
Target:  5'- -gCGGGGGgGUauuaAGGCAGggGCAgCUc -3'
miRNA:   3'- caGCCCCUgCGg---UUUGUCuuCGUgGA- -5'
5351 3' -55.5 NC_001798.1 + 113339 0.66 0.91182
Target:  5'- ---cGGGugGaCCGGACGGGcgguGGCGCCg -3'
miRNA:   3'- cagcCCCugC-GGUUUGUCU----UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 111643 0.78 0.295632
Target:  5'- cGUCGGGGGCGCUcgGCGGggGgGCg- -3'
miRNA:   3'- -CAGCCCCUGCGGuuUGUCuuCgUGga -5'
5351 3' -55.5 NC_001798.1 + 103554 0.67 0.856324
Target:  5'- -aUGGGcacCGCCcggucGGGCAGAGGCGCCUc -3'
miRNA:   3'- caGCCCcu-GCGG-----UUUGUCUUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 102030 0.69 0.796941
Target:  5'- -gCGGGGugGUUggGCGGggGUcuCCg -3'
miRNA:   3'- caGCCCCugCGGuuUGUCuuCGu-GGa -5'
5351 3' -55.5 NC_001798.1 + 97635 0.7 0.720223
Target:  5'- -aCGcGGGcCGCCGcggacguGCGGGAGCGCCg -3'
miRNA:   3'- caGC-CCCuGCGGUu------UGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 97554 0.72 0.628252
Target:  5'- -gCGGGGACGCCcgcgagcgaGGACGGgGAGCGCg- -3'
miRNA:   3'- caGCCCCUGCGG---------UUUGUC-UUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 97492 0.67 0.885891
Target:  5'- -cCGGGGGgGCCGAGgAGGaagAGCcCCg -3'
miRNA:   3'- caGCCCCUgCGGUUUgUCU---UCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 96578 0.67 0.885891
Target:  5'- -gCGGGGACGUCc-GCAuGGAGCugUg -3'
miRNA:   3'- caGCCCCUGCGGuuUGU-CUUCGugGa -5'
5351 3' -55.5 NC_001798.1 + 95568 0.67 0.86404
Target:  5'- -cUGGaGGugGCCcacgAGGCGGAGGC-CCUg -3'
miRNA:   3'- caGCC-CCugCGG----UUUGUCUUCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 94579 0.66 0.917707
Target:  5'- -gCGcGGGuCGCCAGccucCAGA-GCGCCUa -3'
miRNA:   3'- caGC-CCCuGCGGUUu---GUCUuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 94274 0.67 0.86404
Target:  5'- -aCGGGGuguuCGCCGGGCAGucggucgagGGGCGCa- -3'
miRNA:   3'- caGCCCCu---GCGGUUUGUC---------UUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 93286 0.69 0.796032
Target:  5'- cGUCGGGGcguaccuggcgcGCGCC--GCGGGccucgugGGCGCCa -3'
miRNA:   3'- -CAGCCCC------------UGCGGuuUGUCU-------UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 91547 0.7 0.749828
Target:  5'- -cCGGGGuucgagaGCCAGugugugguguccGCGGggGCGCCg -3'
miRNA:   3'- caGCCCCug-----CGGUU------------UGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 86086 0.67 0.892725
Target:  5'- aGUCGGGGccccggcugcGCGCCGccGCGGAcgcccgccGCGCCg -3'
miRNA:   3'- -CAGCCCC----------UGCGGUu-UGUCUu-------CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 85679 0.67 0.892052
Target:  5'- -gCGGGGugcccggGCGCCAcgccCAGAAGCAaCCc -3'
miRNA:   3'- caGCCCC-------UGCGGUuu--GUCUUCGU-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.