miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 84105 0.73 0.576851
Target:  5'- aUCGGccGGGCGuCCAGGCcGAGGCGCCc -3'
miRNA:   3'- cAGCC--CCUGC-GGUUUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 81093 0.67 0.856324
Target:  5'- --gGGGGACGUUcucGCGGcGAGCGCCg -3'
miRNA:   3'- cagCCCCUGCGGuu-UGUC-UUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 78947 0.66 0.917707
Target:  5'- gGUCuGGGGuCGCUuuGGCcgcguccggGGggGCGCCUg -3'
miRNA:   3'- -CAG-CCCCuGCGGu-UUG---------UCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 78029 0.67 0.86404
Target:  5'- uUCGGGucGACGCCGAGCcccuGGcgcGGCugCUg -3'
miRNA:   3'- cAGCCC--CUGCGGUUUGu---CU---UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 77403 0.66 0.899327
Target:  5'- gGUCGGcGGcCGCCGAccugguagucCAGgcGCGCCg -3'
miRNA:   3'- -CAGCC-CCuGCGGUUu---------GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 76493 0.66 0.899327
Target:  5'- cUCGGGGcugGCCGAACuGcAGCGCUUc -3'
miRNA:   3'- cAGCCCCug-CGGUUUGuCuUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 74826 0.68 0.84028
Target:  5'- -cCGGGGACGCgGccgaAGAAGCcgagACCUg -3'
miRNA:   3'- caGCCCCUGCGgUuug-UCUUCG----UGGA- -5'
5351 3' -55.5 NC_001798.1 + 73256 0.66 0.914204
Target:  5'- -cCGGGGACcuggaggcccaagauGCC-GGCGGuAGCACCc -3'
miRNA:   3'- caGCCCCUG---------------CGGuUUGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 71980 0.67 0.878829
Target:  5'- gGUCGGGGACGC---GCuGAGG-GCCa -3'
miRNA:   3'- -CAGCCCCUGCGguuUGuCUUCgUGGa -5'
5351 3' -55.5 NC_001798.1 + 71115 0.69 0.794209
Target:  5'- -cCGGGGACGCUgauggcgcgcgugcGGACGGAcGCgGCCg -3'
miRNA:   3'- caGCCCCUGCGG--------------UUUGUCUuCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 69299 0.69 0.769054
Target:  5'- --gGGGGGCGCCGggGACGGucAGC-CCUc -3'
miRNA:   3'- cagCCCCUGCGGU--UUGUCu-UCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 66867 0.69 0.763335
Target:  5'- aGUCGccGGGGCGCCGGggcuugggaaaggccACGGggGCgggGCCg -3'
miRNA:   3'- -CAGC--CCCUGCGGUU---------------UGUCuuCG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 66590 0.68 0.848402
Target:  5'- cUCGcGGGCGCaCcGACAGAAGUACUc -3'
miRNA:   3'- cAGCcCCUGCG-GuUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 63264 0.73 0.546433
Target:  5'- cGUCGGGGGCggggGCgGAauACAGggGCugCa -3'
miRNA:   3'- -CAGCCCCUG----CGgUU--UGUCuuCGugGa -5'
5351 3' -55.5 NC_001798.1 + 60393 0.71 0.669469
Target:  5'- cGUCGGGGuCGCCcuGGgGGAguAGUACCg -3'
miRNA:   3'- -CAGCCCCuGCGGu-UUgUCU--UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 59351 0.67 0.871544
Target:  5'- --gGGGGugGaaaGGACGGAGGCGCa- -3'
miRNA:   3'- cagCCCCugCgg-UUUGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 58218 0.67 0.871544
Target:  5'- uGUCGGGGAC-CaCAAACAucAGC-CCg -3'
miRNA:   3'- -CAGCCCCUGcG-GUUUGUcuUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 57561 0.68 0.823466
Target:  5'- -gCGGGGACGCgGAGgGGGcGGCAUUg -3'
miRNA:   3'- caGCCCCUGCGgUUUgUCU-UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 55983 0.67 0.885891
Target:  5'- -cCGGGGAgGCC--GCGGggGCGa-- -3'
miRNA:   3'- caGCCCCUgCGGuuUGUCuuCGUgga -5'
5351 3' -55.5 NC_001798.1 + 54923 0.69 0.769054
Target:  5'- aGUCGGuGGGCGagGAugGGggGCGCg- -3'
miRNA:   3'- -CAGCC-CCUGCggUUugUCuuCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.