miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 54383 0.66 0.917707
Target:  5'- -cCGGGGG-GCCGcggcgcggucGGCGGGAGCuGCCg -3'
miRNA:   3'- caGCCCCUgCGGU----------UUGUCUUCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 116521 0.66 0.917707
Target:  5'- -gCGGGGGCGCU--GCu---GCACCg -3'
miRNA:   3'- caGCCCCUGCGGuuUGucuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 10286 0.66 0.923351
Target:  5'- cGUCGGGGGgGC--GACGGggGgACg- -3'
miRNA:   3'- -CAGCCCCUgCGguUUGUCuuCgUGga -5'
5351 3' -55.5 NC_001798.1 + 32323 0.66 0.923351
Target:  5'- -gCGGGGGCcgaggaaguguGCCAGGaAGAcGCGCCa -3'
miRNA:   3'- caGCCCCUG-----------CGGUUUgUCUuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 27148 0.66 0.923351
Target:  5'- -aCGGGG-CGCgGGAgGGAggGGCugCUg -3'
miRNA:   3'- caGCCCCuGCGgUUUgUCU--UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 147009 0.66 0.905693
Target:  5'- cUCGGGGACccCCGGGCGGGccggGGCuugGCCg -3'
miRNA:   3'- cAGCCCCUGc-GGUUUGUCU----UCG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 146419 0.66 0.905693
Target:  5'- -aCGGGGcgaGCCGGGCAGAGuGCggaGCCc -3'
miRNA:   3'- caGCCCCug-CGGUUUGUCUU-CG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 128648 0.67 0.885891
Target:  5'- -cCGGGGAccuCGCCGAGgAGAAcguGCACg- -3'
miRNA:   3'- caGCCCCU---GCGGUUUgUCUU---CGUGga -5'
5351 3' -55.5 NC_001798.1 + 154074 0.67 0.885891
Target:  5'- -nCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 124814 0.67 0.885891
Target:  5'- -cCGGaaGGACGCgagcgacagcgCGAugAGggGCACCa -3'
miRNA:   3'- caGCC--CCUGCG-----------GUUugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 85679 0.67 0.892052
Target:  5'- -gCGGGGugcccggGCGCCAcgccCAGAAGCAaCCc -3'
miRNA:   3'- caGCCCC-------UGCGGUuu--GUCUUCGU-GGa -5'
5351 3' -55.5 NC_001798.1 + 36487 0.67 0.892725
Target:  5'- --aGGGGGCGCCGgcgcGACGcGGGCgGCCg -3'
miRNA:   3'- cagCCCCUGCGGU----UUGUcUUCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 86086 0.67 0.892725
Target:  5'- aGUCGGGGccccggcugcGCGCCGccGCGGAcgcccgccGCGCCg -3'
miRNA:   3'- -CAGCCCC----------UGCGGUu-UGUCUu-------CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 149415 0.67 0.892725
Target:  5'- aGUCGGGGG-GCCucacGCAGuuGCGCg- -3'
miRNA:   3'- -CAGCCCCUgCGGuu--UGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 48368 0.67 0.892725
Target:  5'- -cCGGGGcCGCCccGCGGGGcGUGCCg -3'
miRNA:   3'- caGCCCCuGCGGuuUGUCUU-CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 132056 0.67 0.892725
Target:  5'- aUCGGGGAguaCGCCAugccCGGAuuuucggcGCGCCg -3'
miRNA:   3'- cAGCCCCU---GCGGUuu--GUCUu-------CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 77403 0.66 0.899327
Target:  5'- gGUCGGcGGcCGCCGAccugguagucCAGgcGCGCCg -3'
miRNA:   3'- -CAGCC-CCuGCGGUUu---------GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 76493 0.66 0.899327
Target:  5'- cUCGGGGcugGCCGAACuGcAGCGCUUc -3'
miRNA:   3'- cAGCCCCug-CGGUUUGuCuUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 49980 0.66 0.905693
Target:  5'- cUCGGaGGGCGaguCCGucauGCGGGAGCACg- -3'
miRNA:   3'- cAGCC-CCUGC---GGUu---UGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 135860 0.66 0.905693
Target:  5'- uUCGGGaGGCGUCuGGACGcGGAGUACUg -3'
miRNA:   3'- cAGCCC-CUGCGG-UUUGU-CUUCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.