miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 78029 0.67 0.86404
Target:  5'- uUCGGGucGACGCCGAGCcccuGGcgcGGCugCUg -3'
miRNA:   3'- cAGCCC--CUGCGGUUUGu---CU---UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 42196 0.67 0.86404
Target:  5'- -gCGGGG-CGUgAAAgUGGAAGCGCCg -3'
miRNA:   3'- caGCCCCuGCGgUUU-GUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 26220 0.67 0.86404
Target:  5'- -gCGGGcGACGCCAuGGCGcccGgcGCGCCg -3'
miRNA:   3'- caGCCC-CUGCGGU-UUGU---CuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 103554 0.67 0.856324
Target:  5'- -aUGGGcacCGCCcggucGGGCAGAGGCGCCUc -3'
miRNA:   3'- caGCCCcu-GCGG-----UUUGUCUUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 81093 0.67 0.856324
Target:  5'- --gGGGGACGUUcucGCGGcGAGCGCCg -3'
miRNA:   3'- cagCCCCUGCGGuu-UGUC-UUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 113761 0.67 0.856324
Target:  5'- -gCGGGGGgGUauuaAGGCAGggGCAgCUc -3'
miRNA:   3'- caGCCCCUgCGg---UUUGUCuuCGUgGA- -5'
5351 3' -55.5 NC_001798.1 + 59351 0.67 0.871544
Target:  5'- --gGGGGugGaaaGGACGGAGGCGCa- -3'
miRNA:   3'- cagCCCCugCgg-UUUGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 150455 0.67 0.871544
Target:  5'- -gCGGGGcgACgGCCGcGCGGggGCGCg- -3'
miRNA:   3'- caGCCCC--UG-CGGUuUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 151841 0.67 0.871544
Target:  5'- -gCGcGGGGCGUgAGGCGGGAcccccGCGCCg -3'
miRNA:   3'- caGC-CCCUGCGgUUUGUCUU-----CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 124814 0.67 0.885891
Target:  5'- -cCGGaaGGACGCgagcgacagcgCGAugAGggGCACCa -3'
miRNA:   3'- caGCC--CCUGCG-----------GUUugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 154074 0.67 0.885891
Target:  5'- -nCGGGGcGCGgCAcGGCuGGAGCGCCg -3'
miRNA:   3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 128648 0.67 0.885891
Target:  5'- -cCGGGGAccuCGCCGAGgAGAAcguGCACg- -3'
miRNA:   3'- caGCCCCU---GCGGUUUgUCUU---CGUGga -5'
5351 3' -55.5 NC_001798.1 + 97492 0.67 0.885891
Target:  5'- -cCGGGGGgGCCGAGgAGGaagAGCcCCg -3'
miRNA:   3'- caGCCCCUgCGGUUUgUCU---UCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 55983 0.67 0.885891
Target:  5'- -cCGGGGAgGCC--GCGGggGCGa-- -3'
miRNA:   3'- caGCCCCUgCGGuuUGUCuuCGUgga -5'
5351 3' -55.5 NC_001798.1 + 96578 0.67 0.885891
Target:  5'- -gCGGGGACGUCc-GCAuGGAGCugUg -3'
miRNA:   3'- caGCCCCUGCGGuuUGU-CUUCGugGa -5'
5351 3' -55.5 NC_001798.1 + 2470 0.67 0.885891
Target:  5'- gGUCGGGGcccucggcGgGCC-GGCGGGucAGCGCCg -3'
miRNA:   3'- -CAGCCCC--------UgCGGuUUGUCU--UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 144541 0.67 0.878829
Target:  5'- cGUCGGGGAgaccCGCCGuGgGGggGCGu-- -3'
miRNA:   3'- -CAGCCCCU----GCGGUuUgUCuuCGUgga -5'
5351 3' -55.5 NC_001798.1 + 34969 0.67 0.878829
Target:  5'- --aGGGGGCggccGCCGAgguGCGGggGCcCCUc -3'
miRNA:   3'- cagCCCCUG----CGGUU---UGUCuuCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 71980 0.67 0.878829
Target:  5'- gGUCGGGGACGC---GCuGAGG-GCCa -3'
miRNA:   3'- -CAGCCCCUGCGguuUGuCUUCgUGGa -5'
5351 3' -55.5 NC_001798.1 + 36439 0.68 0.851595
Target:  5'- gGUCGGGGuCGCgGcgggGAaggaaggaaagacccCGGAAGCGCCg -3'
miRNA:   3'- -CAGCCCCuGCGgU----UU---------------GUCUUCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.