Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 3' | -55.5 | NC_001798.1 | + | 36487 | 0.67 | 0.892725 |
Target: 5'- --aGGGGGCGCCGgcgcGACGcGGGCgGCCg -3' miRNA: 3'- cagCCCCUGCGGU----UUGUcUUCG-UGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 86086 | 0.67 | 0.892725 |
Target: 5'- aGUCGGGGccccggcugcGCGCCGccGCGGAcgcccgccGCGCCg -3' miRNA: 3'- -CAGCCCC----------UGCGGUu-UGUCUu-------CGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 149415 | 0.67 | 0.892725 |
Target: 5'- aGUCGGGGG-GCCucacGCAGuuGCGCg- -3' miRNA: 3'- -CAGCCCCUgCGGuu--UGUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 48368 | 0.67 | 0.892725 |
Target: 5'- -cCGGGGcCGCCccGCGGGGcGUGCCg -3' miRNA: 3'- caGCCCCuGCGGuuUGUCUU-CGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 132056 | 0.67 | 0.892725 |
Target: 5'- aUCGGGGAguaCGCCAugccCGGAuuuucggcGCGCCg -3' miRNA: 3'- cAGCCCCU---GCGGUuu--GUCUu-------CGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 85679 | 0.67 | 0.892052 |
Target: 5'- -gCGGGGugcccggGCGCCAcgccCAGAAGCAaCCc -3' miRNA: 3'- caGCCCC-------UGCGGUuu--GUCUUCGU-GGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 2470 | 0.67 | 0.885891 |
Target: 5'- gGUCGGGGcccucggcGgGCC-GGCGGGucAGCGCCg -3' miRNA: 3'- -CAGCCCC--------UgCGGuUUGUCU--UCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 96578 | 0.67 | 0.885891 |
Target: 5'- -gCGGGGACGUCc-GCAuGGAGCugUg -3' miRNA: 3'- caGCCCCUGCGGuuUGU-CUUCGugGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 55983 | 0.67 | 0.885891 |
Target: 5'- -cCGGGGAgGCC--GCGGggGCGa-- -3' miRNA: 3'- caGCCCCUgCGGuuUGUCuuCGUgga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 97492 | 0.67 | 0.885891 |
Target: 5'- -cCGGGGGgGCCGAGgAGGaagAGCcCCg -3' miRNA: 3'- caGCCCCUgCGGUUUgUCU---UCGuGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 128648 | 0.67 | 0.885891 |
Target: 5'- -cCGGGGAccuCGCCGAGgAGAAcguGCACg- -3' miRNA: 3'- caGCCCCU---GCGGUUUgUCUU---CGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 154074 | 0.67 | 0.885891 |
Target: 5'- -nCGGGGcGCGgCAcGGCuGGAGCGCCg -3' miRNA: 3'- caGCCCC-UGCgGU-UUGuCUUCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 124814 | 0.67 | 0.885891 |
Target: 5'- -cCGGaaGGACGCgagcgacagcgCGAugAGggGCACCa -3' miRNA: 3'- caGCC--CCUGCG-----------GUUugUCuuCGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 71980 | 0.67 | 0.878829 |
Target: 5'- gGUCGGGGACGC---GCuGAGG-GCCa -3' miRNA: 3'- -CAGCCCCUGCGguuUGuCUUCgUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 34969 | 0.67 | 0.878829 |
Target: 5'- --aGGGGGCggccGCCGAgguGCGGggGCcCCUc -3' miRNA: 3'- cagCCCCUG----CGGUU---UGUCuuCGuGGA- -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 144541 | 0.67 | 0.878829 |
Target: 5'- cGUCGGGGAgaccCGCCGuGgGGggGCGu-- -3' miRNA: 3'- -CAGCCCCU----GCGGUuUgUCuuCGUgga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 151841 | 0.67 | 0.871544 |
Target: 5'- -gCGcGGGGCGUgAGGCGGGAcccccGCGCCg -3' miRNA: 3'- caGC-CCCUGCGgUUUGUCUU-----CGUGGa -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 150455 | 0.67 | 0.871544 |
Target: 5'- -gCGGGGcgACgGCCGcGCGGggGCGCg- -3' miRNA: 3'- caGCCCC--UG-CGGUuUGUCuuCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 59351 | 0.67 | 0.871544 |
Target: 5'- --gGGGGugGaaaGGACGGAGGCGCa- -3' miRNA: 3'- cagCCCCugCgg-UUUGUCUUCGUGga -5' |
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5351 | 3' | -55.5 | NC_001798.1 | + | 58218 | 0.67 | 0.871544 |
Target: 5'- uGUCGGGGAC-CaCAAACAucAGC-CCg -3' miRNA: 3'- -CAGCCCCUGcG-GUUUGUcuUCGuGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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