Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5355 | 3' | -57.3 | NC_001798.1 | + | 152630 | 0.66 | 0.857158 |
Target: 5'- aUGGgaGUcccCCCGgcGCCCCGCCGGc- -3' miRNA: 3'- gACCaaCAu--GGGCa-CGGGGUGGUCuc -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 71410 | 0.66 | 0.857158 |
Target: 5'- -cGGggGUGCCCGcgcggacGCCCCccgGCCAcGGGc -3' miRNA: 3'- gaCCaaCAUGGGCa------CGGGG---UGGU-CUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 34816 | 0.66 | 0.849392 |
Target: 5'- -cGGggcc-CCCGcGCUCCGCCGGGGg -3' miRNA: 3'- gaCCaacauGGGCaCGGGGUGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 59791 | 0.66 | 0.849392 |
Target: 5'- -cGGgcgGUACCCGgGCCUgGCCcucGAGg -3' miRNA: 3'- gaCCaa-CAUGGGCaCGGGgUGGu--CUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 77419 | 0.67 | 0.79809 |
Target: 5'- cCUGGUaGUccaggcgcgccggGCCUGcGCCCaGCCGGAGg -3' miRNA: 3'- -GACCAaCA-------------UGGGCaCGGGgUGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 25520 | 0.68 | 0.780906 |
Target: 5'- cCUGGaUGcGCCagGUGCCCgAcCCGGAGg -3' miRNA: 3'- -GACCaACaUGGg-CACGGGgU-GGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 19732 | 0.68 | 0.780906 |
Target: 5'- gCUGGggGU-CCCGcGCUCaugGCCGGAGa -3' miRNA: 3'- -GACCaaCAuGGGCaCGGGg--UGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 15538 | 0.68 | 0.752832 |
Target: 5'- gCUGGUguucgUGUGCCCGgccccgggcguUGCCgCCGCCgcggcGGGGa -3' miRNA: 3'- -GACCA-----ACAUGGGC-----------ACGG-GGUGG-----UCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 150981 | 0.69 | 0.694106 |
Target: 5'- -cGGUUaGUGCCCGacCCCCGCCcGAc -3' miRNA: 3'- gaCCAA-CAUGGGCacGGGGUGGuCUc -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 114833 | 0.69 | 0.684089 |
Target: 5'- -----cGUGgCCGUGCCCCGCCuGAc -3' miRNA: 3'- gaccaaCAUgGGCACGGGGUGGuCUc -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 131387 | 0.7 | 0.643683 |
Target: 5'- cCUGGgg--GCCCGgcGUCCCAUCGGGGa -3' miRNA: 3'- -GACCaacaUGGGCa-CGGGGUGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 41448 | 0.7 | 0.623393 |
Target: 5'- -gGGggGU-CCa-UGCCCCGCCGGGGg -3' miRNA: 3'- gaCCaaCAuGGgcACGGGGUGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 75189 | 0.71 | 0.593025 |
Target: 5'- gCUGGgg--GCCCGccGCCCC-CCGGAGc -3' miRNA: 3'- -GACCaacaUGGGCa-CGGGGuGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 146721 | 0.72 | 0.527344 |
Target: 5'- -cGGUUGcggGCgCCGUGCCcggagauccauuaagCCGCCGGAGa -3' miRNA: 3'- gaCCAACa--UG-GGCACGG---------------GGUGGUCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 24134 | 0.72 | 0.523442 |
Target: 5'- gUGGcgcgGgCCGUGCCCCACCuGGGg -3' miRNA: 3'- gACCaacaUgGGCACGGGGUGGuCUC- -5' |
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5355 | 3' | -57.3 | NC_001798.1 | + | 84600 | 0.75 | 0.395745 |
Target: 5'- -cGGUcccgGUGCCgGUGCCCCGCCGa-- -3' miRNA: 3'- gaCCAa---CAUGGgCACGGGGUGGUcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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