miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5355 3' -57.3 NC_001798.1 + 152630 0.66 0.857158
Target:  5'- aUGGgaGUcccCCCGgcGCCCCGCCGGc- -3'
miRNA:   3'- gACCaaCAu--GGGCa-CGGGGUGGUCuc -5'
5355 3' -57.3 NC_001798.1 + 71410 0.66 0.857158
Target:  5'- -cGGggGUGCCCGcgcggacGCCCCccgGCCAcGGGc -3'
miRNA:   3'- gaCCaaCAUGGGCa------CGGGG---UGGU-CUC- -5'
5355 3' -57.3 NC_001798.1 + 34816 0.66 0.849392
Target:  5'- -cGGggcc-CCCGcGCUCCGCCGGGGg -3'
miRNA:   3'- gaCCaacauGGGCaCGGGGUGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 59791 0.66 0.849392
Target:  5'- -cGGgcgGUACCCGgGCCUgGCCcucGAGg -3'
miRNA:   3'- gaCCaa-CAUGGGCaCGGGgUGGu--CUC- -5'
5355 3' -57.3 NC_001798.1 + 77419 0.67 0.79809
Target:  5'- cCUGGUaGUccaggcgcgccggGCCUGcGCCCaGCCGGAGg -3'
miRNA:   3'- -GACCAaCA-------------UGGGCaCGGGgUGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 25520 0.68 0.780906
Target:  5'- cCUGGaUGcGCCagGUGCCCgAcCCGGAGg -3'
miRNA:   3'- -GACCaACaUGGg-CACGGGgU-GGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 19732 0.68 0.780906
Target:  5'- gCUGGggGU-CCCGcGCUCaugGCCGGAGa -3'
miRNA:   3'- -GACCaaCAuGGGCaCGGGg--UGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 15538 0.68 0.752832
Target:  5'- gCUGGUguucgUGUGCCCGgccccgggcguUGCCgCCGCCgcggcGGGGa -3'
miRNA:   3'- -GACCA-----ACAUGGGC-----------ACGG-GGUGG-----UCUC- -5'
5355 3' -57.3 NC_001798.1 + 150981 0.69 0.694106
Target:  5'- -cGGUUaGUGCCCGacCCCCGCCcGAc -3'
miRNA:   3'- gaCCAA-CAUGGGCacGGGGUGGuCUc -5'
5355 3' -57.3 NC_001798.1 + 114833 0.69 0.684089
Target:  5'- -----cGUGgCCGUGCCCCGCCuGAc -3'
miRNA:   3'- gaccaaCAUgGGCACGGGGUGGuCUc -5'
5355 3' -57.3 NC_001798.1 + 131387 0.7 0.643683
Target:  5'- cCUGGgg--GCCCGgcGUCCCAUCGGGGa -3'
miRNA:   3'- -GACCaacaUGGGCa-CGGGGUGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 41448 0.7 0.623393
Target:  5'- -gGGggGU-CCa-UGCCCCGCCGGGGg -3'
miRNA:   3'- gaCCaaCAuGGgcACGGGGUGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 75189 0.71 0.593025
Target:  5'- gCUGGgg--GCCCGccGCCCC-CCGGAGc -3'
miRNA:   3'- -GACCaacaUGGGCa-CGGGGuGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 146721 0.72 0.527344
Target:  5'- -cGGUUGcggGCgCCGUGCCcggagauccauuaagCCGCCGGAGa -3'
miRNA:   3'- gaCCAACa--UG-GGCACGG---------------GGUGGUCUC- -5'
5355 3' -57.3 NC_001798.1 + 24134 0.72 0.523442
Target:  5'- gUGGcgcgGgCCGUGCCCCACCuGGGg -3'
miRNA:   3'- gACCaacaUgGGCACGGGGUGGuCUC- -5'
5355 3' -57.3 NC_001798.1 + 84600 0.75 0.395745
Target:  5'- -cGGUcccgGUGCCgGUGCCCCGCCGa-- -3'
miRNA:   3'- gaCCAa---CAUGGgCACGGGGUGGUcuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.