miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5355 5' -62.6 NC_001798.1 + 154292 0.65 0.671499
Target:  5'- gGGCCGU-GUUgcgggcccucuuaaGGGGCGGC-GGCAggacggggacUCCc -3'
miRNA:   3'- -CCGGCAcCAG--------------UCCCGCCGcCCGU----------AGG- -5'
5355 5' -62.6 NC_001798.1 + 97608 0.66 0.664741
Target:  5'- gGGCCGgagagCuGGGGCGacaucgcgacGCGGGCcgCCg -3'
miRNA:   3'- -CCGGCacca-G-UCCCGC----------CGCCCGuaGG- -5'
5355 5' -62.6 NC_001798.1 + 25077 0.66 0.655068
Target:  5'- cGCCccGGcCAGGGCGccgcCGGGCGgcgCCc -3'
miRNA:   3'- cCGGcaCCaGUCCCGCc---GCCCGUa--GG- -5'
5355 5' -62.6 NC_001798.1 + 152220 0.66 0.655068
Target:  5'- uGCCGggGGUCugccGcGGCGGCcgcucgGGGCcgggGUCCg -3'
miRNA:   3'- cCGGCa-CCAGu---C-CCGCCG------CCCG----UAGG- -5'
5355 5' -62.6 NC_001798.1 + 128697 0.66 0.655068
Target:  5'- cGGCCacacgGG-CAuGGUGG-GGGCGUCCc -3'
miRNA:   3'- -CCGGca---CCaGUcCCGCCgCCCGUAGG- -5'
5355 5' -62.6 NC_001798.1 + 48155 0.66 0.645378
Target:  5'- cGCCGcGGUCGGGcGCcuGGCGGccacGCAcgCCc -3'
miRNA:   3'- cCGGCaCCAGUCC-CG--CCGCC----CGUa-GG- -5'
5355 5' -62.6 NC_001798.1 + 108835 0.66 0.645378
Target:  5'- uGGcCCGUGGgCGucuggacgacGGGCgGGCuGGCGUUCg -3'
miRNA:   3'- -CC-GGCACCaGU----------CCCG-CCGcCCGUAGG- -5'
5355 5' -62.6 NC_001798.1 + 26198 0.66 0.644408
Target:  5'- cGGCCG-GGcCGccgccucGGGC-GCGGGCGacgCCa -3'
miRNA:   3'- -CCGGCaCCaGU-------CCCGcCGCCCGUa--GG- -5'
5355 5' -62.6 NC_001798.1 + 71970 0.66 0.635678
Target:  5'- uGGCCcugGUGGUCGGGGaCGcGCugaGGGCcacGUgCa -3'
miRNA:   3'- -CCGG---CACCAGUCCC-GC-CG---CCCG---UAgG- -5'
5355 5' -62.6 NC_001798.1 + 55989 0.66 0.635678
Target:  5'- aGGCCGcgGGggcgaGGGGCugguaGGCGGGUc-CCg -3'
miRNA:   3'- -CCGGCa-CCag---UCCCG-----CCGCCCGuaGG- -5'
5355 5' -62.6 NC_001798.1 + 148371 0.66 0.635678
Target:  5'- aGCCaG-GGUgAGGaGgGGCGGGCGUg- -3'
miRNA:   3'- cCGG-CaCCAgUCC-CgCCGCCCGUAgg -5'
5355 5' -62.6 NC_001798.1 + 93106 0.66 0.635678
Target:  5'- cGCCG-GGaacaAGGGCccGGCGGGCGg-- -3'
miRNA:   3'- cCGGCaCCag--UCCCG--CCGCCCGUagg -5'
5355 5' -62.6 NC_001798.1 + 144554 0.66 0.632767
Target:  5'- cGCCGUGGg-GGGGCguucgaaagggcgaGGaCGGGCggCUg -3'
miRNA:   3'- cCGGCACCagUCCCG--------------CC-GCCCGuaGG- -5'
5355 5' -62.6 NC_001798.1 + 41463 0.66 0.625975
Target:  5'- cGCCG-GGg-GGGGCGGUcGGCGggcCCa -3'
miRNA:   3'- cCGGCaCCagUCCCGCCGcCCGUa--GG- -5'
5355 5' -62.6 NC_001798.1 + 154106 0.66 0.625975
Target:  5'- cGGCCGgcgccgGGgacCccGGCGGCGGGgAcCCc -3'
miRNA:   3'- -CCGGCa-----CCa--GucCCGCCGCCCgUaGG- -5'
5355 5' -62.6 NC_001798.1 + 44402 0.66 0.625975
Target:  5'- gGGCCGggagcaauggGGUCcc-GCGGCccaGGGCGUCUu -3'
miRNA:   3'- -CCGGCa---------CCAGuccCGCCG---CCCGUAGG- -5'
5355 5' -62.6 NC_001798.1 + 147612 0.66 0.625975
Target:  5'- cGGCgGggagaGGggGGGGgGGCGGGCGg-- -3'
miRNA:   3'- -CCGgCa----CCagUCCCgCCGCCCGUagg -5'
5355 5' -62.6 NC_001798.1 + 41854 0.66 0.625975
Target:  5'- aGGCUuUGGuUCAGGGCgccgcGGCcGGGgAUCa -3'
miRNA:   3'- -CCGGcACC-AGUCCCG-----CCG-CCCgUAGg -5'
5355 5' -62.6 NC_001798.1 + 35777 0.66 0.625005
Target:  5'- cGGCUGcggugcuugGGUCuccuucgucGGGCGGCgggggggGGGCGUCg -3'
miRNA:   3'- -CCGGCa--------CCAGu--------CCCGCCG-------CCCGUAGg -5'
5355 5' -62.6 NC_001798.1 + 2017 0.66 0.616278
Target:  5'- cGGCCGUGG-CGGGcccgcagaGcCGGUugcccaGGGCcgCCa -3'
miRNA:   3'- -CCGGCACCaGUCC--------C-GCCG------CCCGuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.