miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 3' -58.2 NC_001798.1 + 75761 0.67 0.766669
Target:  5'- aGUGGCuccuGGAGCGCucgcGCGCCcACCCGa -3'
miRNA:   3'- -UACUG----UCUUGCGucucCGCGG-UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 119345 0.67 0.763848
Target:  5'- -gGACGgcGAACGCAggcugccgcuuuacGAGGCGCUggucGCCUGg -3'
miRNA:   3'- uaCUGU--CUUGCGU--------------CUCCGCGG----UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 85218 0.67 0.757226
Target:  5'- -cGACgAGGACGUGGAGaGCGacgucgCGCCCGc -3'
miRNA:   3'- uaCUG-UCUUGCGUCUC-CGCg-----GUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 122110 0.67 0.757226
Target:  5'- -cGGCGGGggGCGCuuugccagccGGGGGgGCC-CCCGg -3'
miRNA:   3'- uaCUGUCU--UGCG----------UCUCCgCGGuGGGC- -5'
5361 3' -58.2 NC_001798.1 + 97258 0.67 0.757226
Target:  5'- -gGGCGGAgcacuucgaucGCGCGuucGGGgGCCACCUGg -3'
miRNA:   3'- uaCUGUCU-----------UGCGUc--UCCgCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 1476 0.67 0.757226
Target:  5'- -cGGCGcgccGGGCGCcauGGCGUCGCCCGc -3'
miRNA:   3'- uaCUGU----CUUGCGucuCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 31656 0.67 0.747674
Target:  5'- --aGCGcGGACGCGGccGGGCccgcGCCGCCCGc -3'
miRNA:   3'- uacUGU-CUUGCGUC--UCCG----CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 34107 0.67 0.747674
Target:  5'- -cGugGGGGCGguG-GGCGUacggGCCCGa -3'
miRNA:   3'- uaCugUCUUGCguCuCCGCGg---UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 96062 0.67 0.747674
Target:  5'- -aGAgGGGAUGuCAGGGGCccGCCGCCg- -3'
miRNA:   3'- uaCUgUCUUGC-GUCUCCG--CGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 91565 0.67 0.738022
Target:  5'- uGUGugGuGucCGCGGGGGCGCCGCg-- -3'
miRNA:   3'- -UACugU-CuuGCGUCUCCGCGGUGggc -5'
5361 3' -58.2 NC_001798.1 + 85174 0.67 0.738022
Target:  5'- cUGGCGGccugucACGUGGuAGGCguGCCGCCCGc -3'
miRNA:   3'- uACUGUCu-----UGCGUC-UCCG--CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 53888 0.67 0.738022
Target:  5'- -gGAgGGccCGCGGAGacguuugcGCGCCACCUGg -3'
miRNA:   3'- uaCUgUCuuGCGUCUC--------CGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 104776 0.67 0.737052
Target:  5'- -cGcCAGGuaGCGCGGAGGCggGCCAgcaggucCCCGa -3'
miRNA:   3'- uaCuGUCU--UGCGUCUCCG--CGGU-------GGGC- -5'
5361 3' -58.2 NC_001798.1 + 16191 0.67 0.737052
Target:  5'- -cGGgGGGACGCAcGGGccgcccuccgcacGCGCCGCCUGu -3'
miRNA:   3'- uaCUgUCUUGCGU-CUC-------------CGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 15508 0.67 0.734135
Target:  5'- gGUGGgGGGcguuuucGCuGCGGAGGCGCUgcugguguucguguGCCCGg -3'
miRNA:   3'- -UACUgUCU-------UG-CGUCUCCGCGG--------------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 106447 0.67 0.728279
Target:  5'- uUGGCGaauucGAacACGCAGAugcagucugggcGGCGCgGCCCGa -3'
miRNA:   3'- uACUGU-----CU--UGCGUCU------------CCGCGgUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 12887 0.67 0.728279
Target:  5'- --aGCAGggUGCugguguacGGGGGCuuggggccguGCCACCCGg -3'
miRNA:   3'- uacUGUCuuGCG--------UCUCCG----------CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 35434 0.68 0.718454
Target:  5'- -cGGCGGGagGCGUGGGccgcuGGCGCCgcgGCCCGu -3'
miRNA:   3'- uaCUGUCU--UGCGUCU-----CCGCGG---UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 5712 0.68 0.718454
Target:  5'- -gGGCAaagugcGAGCGCu--GGCGCCcuGCCCGg -3'
miRNA:   3'- uaCUGU------CUUGCGucuCCGCGG--UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 102224 0.68 0.718454
Target:  5'- -cGACcGGGCGCGGcucgGGGCGggccUCGCCCGg -3'
miRNA:   3'- uaCUGuCUUGCGUC----UCCGC----GGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.