miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 5' -56.6 NC_001798.1 + 24642 0.66 0.906983
Target:  5'- uGGCGGAgGGCuucgacggcgaccugGCgg-CCGUGCCGgggcuggCCg -3'
miRNA:   3'- -CCGCCUaCUG---------------CGaaaGGCGCGGCa------GG- -5'
5361 5' -56.6 NC_001798.1 + 135515 0.66 0.904557
Target:  5'- cGGCGcGAUccagGACGCccgCCGgGCCcucgaggcGUCCg -3'
miRNA:   3'- -CCGC-CUA----CUGCGaaaGGCgCGG--------CAGG- -5'
5361 5' -56.6 NC_001798.1 + 19071 0.66 0.904557
Target:  5'- gGGCGGcgGAC-CUgUgUGUGCCGUUUu -3'
miRNA:   3'- -CCGCCuaCUGcGAaAgGCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 48337 0.66 0.904557
Target:  5'- cGGCgcaGGAcgucGACGCga-CCGCGgCCGcCCg -3'
miRNA:   3'- -CCG---CCUa---CUGCGaaaGGCGC-GGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 57008 0.66 0.904557
Target:  5'- gGGCGGAacACGCgaa-CGCGCacccagGUCCc -3'
miRNA:   3'- -CCGCCUacUGCGaaagGCGCGg-----CAGG- -5'
5361 5' -56.6 NC_001798.1 + 153078 0.66 0.904557
Target:  5'- gGGCGGAgcGGCGggg-CgGCGCCGggCCc -3'
miRNA:   3'- -CCGCCUa-CUGCgaaaGgCGCGGCa-GG- -5'
5361 5' -56.6 NC_001798.1 + 1146 0.66 0.904557
Target:  5'- cGGCGGcGUGGCcaGCc--CCGCGgCgGUCCc -3'
miRNA:   3'- -CCGCC-UACUG--CGaaaGGCGC-GgCAGG- -5'
5361 5' -56.6 NC_001798.1 + 25752 0.66 0.904557
Target:  5'- gGGCGcGcagGGCGUg--CUGCuGCUGUCCa -3'
miRNA:   3'- -CCGC-Cua-CUGCGaaaGGCG-CGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 84866 0.66 0.90333
Target:  5'- cGGCGGGggucauguccucGAaccagacggcCGCgucccCCGCGCCGUCUc -3'
miRNA:   3'- -CCGCCUa-----------CU----------GCGaaa--GGCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 27489 0.66 0.90333
Target:  5'- cGGgGGcgGGCGCgggaaaaaagCCGCGCgGgggcgCCc -3'
miRNA:   3'- -CCgCCuaCUGCGaaa-------GGCGCGgCa----GG- -5'
5361 5' -56.6 NC_001798.1 + 150651 0.66 0.902713
Target:  5'- cGCGGggGGCGUccugcccuccgccgCCGCGgCGUCUu -3'
miRNA:   3'- cCGCCuaCUGCGaaa-----------GGCGCgGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 116520 0.66 0.898334
Target:  5'- cGCGGG-GGCGCUgcugcaCCGCGgggGUCCg -3'
miRNA:   3'- cCGCCUaCUGCGAaa----GGCGCgg-CAGG- -5'
5361 5' -56.6 NC_001798.1 + 22295 0.66 0.898334
Target:  5'- gGGCGGAgcggcggcGGCGCgaccaaCGgGCCG-CCg -3'
miRNA:   3'- -CCGCCUa-------CUGCGaaag--GCgCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 103117 0.66 0.898334
Target:  5'- uGGUGucguaGGUGACGauggUUCCaagGCGCCGcCCg -3'
miRNA:   3'- -CCGC-----CUACUGCga--AAGG---CGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 43126 0.66 0.896424
Target:  5'- cGGCGGgcG-CGCgucCCGCGUcacgcgggcccaguCGUCCc -3'
miRNA:   3'- -CCGCCuaCuGCGaaaGGCGCG--------------GCAGG- -5'
5361 5' -56.6 NC_001798.1 + 1714 0.66 0.894493
Target:  5'- cGGcCGGAggccagcacggugcGGCGCaggucCCGCGCCG-CCg -3'
miRNA:   3'- -CC-GCCUa-------------CUGCGaaa--GGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 91093 0.66 0.894493
Target:  5'- aGGCGGccgucguggaccccgGUG-CGCUgcUCCGCGggggCGUCCu -3'
miRNA:   3'- -CCGCC---------------UACuGCGAa-AGGCGCg---GCAGG- -5'
5361 5' -56.6 NC_001798.1 + 77979 0.66 0.891889
Target:  5'- cGGCuGGA--GCGCggcgUUCCaCGCCG-CCg -3'
miRNA:   3'- -CCG-CCUacUGCGa---AAGGcGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 86108 0.66 0.891889
Target:  5'- cGCcGcgGACGCccgCCGCGCCGcggucagcgagUCCu -3'
miRNA:   3'- cCGcCuaCUGCGaaaGGCGCGGC-----------AGG- -5'
5361 5' -56.6 NC_001798.1 + 79261 0.66 0.891889
Target:  5'- uGGCGGAguucGACGCggcggCCGCGgaccuggccCCGUg- -3'
miRNA:   3'- -CCGCCUa---CUGCGaaa--GGCGC---------GGCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.