miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 3' -58.4 NC_001798.1 + 141576 0.68 0.702251
Target:  5'- gGAGcUGcGGCGGCGGCacgCgACGGCCGg -3'
miRNA:   3'- -CUCuACcUCGCUGCCGa--GgUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 60879 0.68 0.702251
Target:  5'- aAGG-GGGGCGGCGGC-CgCACcGCCGg -3'
miRNA:   3'- cUCUaCCUCGCUGCCGaG-GUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 97571 0.68 0.702251
Target:  5'- cGAGGacggGGAGCG-CGGCcCCG-AGCCAg -3'
miRNA:   3'- -CUCUa---CCUCGCuGCCGaGGUgUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 32963 0.68 0.682235
Target:  5'- uGGGggGGGGgGACGGa--CACGGCCc -3'
miRNA:   3'- -CUCuaCCUCgCUGCCgagGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 138731 0.68 0.672161
Target:  5'- ----cGGGcCGGCGcGCUCCGCGGCCc -3'
miRNA:   3'- cucuaCCUcGCUGC-CGAGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 28785 0.68 0.672161
Target:  5'- gGAGgcGGcGGCGGCGGCgcgcggguccUCCGCcGCCGc -3'
miRNA:   3'- -CUCuaCC-UCGCUGCCG----------AGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 448 0.68 0.672161
Target:  5'- ----cGGGGCuGCGGUcCCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGcUGCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 95378 0.68 0.662056
Target:  5'- gGAGGgcGGGGCGGCGGUcgCCAgCAGCg- -3'
miRNA:   3'- -CUCUa-CCUCGCUGCCGa-GGU-GUCGgu -5'
5364 3' -58.4 NC_001798.1 + 77979 0.68 0.662056
Target:  5'- cGGcUGGAGCG-CGGCguUCCAC-GCCGc -3'
miRNA:   3'- cUCuACCUCGCuGCCG--AGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 36577 0.69 0.655981
Target:  5'- cGGGcgGGGGCGcGCGGCggCCgggcgggggcgcgcgGCGGCCGg -3'
miRNA:   3'- -CUCuaCCUCGC-UGCCGa-GG---------------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 36514 0.69 0.655981
Target:  5'- cGGGcgGGGGCGcGCGGCggCCgggcgggggcgcgcgGCGGCCGg -3'
miRNA:   3'- -CUCuaCCUCGC-UGCCGa-GG---------------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2268 0.69 0.651927
Target:  5'- gGGGgcGGGGCGGCGcaGCg-CGCGGCCAg -3'
miRNA:   3'- -CUCuaCCUCGCUGC--CGagGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 31870 0.69 0.651927
Target:  5'- cGGAgGGGGCGGCGGC-CCGCccCCGg -3'
miRNA:   3'- cUCUaCCUCGCUGCCGaGGUGucGGU- -5'
5364 3' -58.4 NC_001798.1 + 6011 0.69 0.64787
Target:  5'- cGGGAcGGcAGCGGCGGCaucgcgaagggggCCACAGCgAg -3'
miRNA:   3'- -CUCUaCC-UCGCUGCCGa------------GGUGUCGgU- -5'
5364 3' -58.4 NC_001798.1 + 27552 0.69 0.641782
Target:  5'- cGGggGGAGgGGCGGCgCCcgcgggggaGCGGCCGg -3'
miRNA:   3'- cUCuaCCUCgCUGCCGaGG---------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 153758 0.69 0.631629
Target:  5'- cAGGUGGGGCGGaagggGGCgCUGCGGCCc -3'
miRNA:   3'- cUCUACCUCGCUg----CCGaGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 61278 0.69 0.631629
Target:  5'- cGGGAuagcgucuuguUGGAGCGG-GGUcgucgCCGCAGCCAc -3'
miRNA:   3'- -CUCU-----------ACCUCGCUgCCGa----GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 82008 0.69 0.621478
Target:  5'- ----gGGGGCGACcGCcgCCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGCUGcCGa-GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2096 0.69 0.621478
Target:  5'- cGGGggGGgcccgcccccGGCG-CGGC-CCGCGGCCAg -3'
miRNA:   3'- -CUCuaCC----------UCGCuGCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 35434 0.69 0.621478
Target:  5'- cGGcgGGAgGCGugGGCcgcuggcgCCGCGGCCc -3'
miRNA:   3'- cUCuaCCU-CGCugCCGa-------GGUGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.