Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5364 | 5' | -61.9 | NC_001798.1 | + | 97007 | 0.66 | 0.667514 |
Target: 5'- cGGccCGCCGCCcGCCGauAGCUCuucugUCCGCg -3' miRNA: 3'- -CCa-GCGGCGGcCGGUc-UCGAG-----AGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 2254 | 0.66 | 0.667514 |
Target: 5'- cGGgcgCGCCGCCGGggggCGGGGCggcgCagCGCg -3' miRNA: 3'- -CCa--GCGGCGGCCg---GUCUCGa---GagGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 115327 | 0.66 | 0.667514 |
Target: 5'- uGGUgccCGCCcCCGGCCacccGGAGC-C-CCGCg -3' miRNA: 3'- -CCA---GCGGcGGCCGG----UCUCGaGaGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 54394 | 0.66 | 0.667514 |
Target: 5'- cGG-CGCgGUCGGCgGGAGCUg-CCGg -3' miRNA: 3'- -CCaGCGgCGGCCGgUCUCGAgaGGUg -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 150886 | 0.66 | 0.661637 |
Target: 5'- gGGUCGCCcCCGcaccgccgcccccgcGCCGGGgcGCUCUUCGg -3' miRNA: 3'- -CCAGCGGcGGC---------------CGGUCU--CGAGAGGUg -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 91868 | 0.66 | 0.666535 |
Target: 5'- cGGcCGCC-CCGGCCgAGcauacccAGCUCUgggCCGCc -3' miRNA: 3'- -CCaGCGGcGGCCGG-UC-------UCGAGA---GGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 153956 | 0.66 | 0.666535 |
Target: 5'- --gCGCCGCaggagcgaggacgCGGCCGGcgcGCUCUCgACc -3' miRNA: 3'- ccaGCGGCG-------------GCCGGUCu--CGAGAGgUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 94583 | 0.66 | 0.667514 |
Target: 5'- gGGUCGCCaGCCu-CCAGAGCgcCUaCCAg -3' miRNA: 3'- -CCAGCGG-CGGccGGUCUCGa-GA-GGUg -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 4907 | 0.66 | 0.667514 |
Target: 5'- cGGg-GCCGCCGGUCG----UCUCCGCc -3' miRNA: 3'- -CCagCGGCGGCCGGUcucgAGAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 23680 | 0.67 | 0.569515 |
Target: 5'- cGGUgGCCgGCCGcgacGCCAcGGGCcgCUUCACg -3' miRNA: 3'- -CCAgCGG-CGGC----CGGU-CUCGa-GAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 70091 | 0.67 | 0.569515 |
Target: 5'- cGGUCGCCauGUCGGaCAGcGCgCUCCAg -3' miRNA: 3'- -CCAGCGG--CGGCCgGUCuCGaGAGGUg -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 130449 | 0.67 | 0.569515 |
Target: 5'- cGUCuggGCCcCCGGCCAcuGCUgCUCCACc -3' miRNA: 3'- cCAG---CGGcGGCCGGUcuCGA-GAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 24909 | 0.67 | 0.579234 |
Target: 5'- cGG-CGCUGCCGcggagcccgcGCCugcuGAGCUCcgCCGCc -3' miRNA: 3'- -CCaGCGGCGGC----------CGGu---CUCGAGa-GGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 24669 | 0.67 | 0.579234 |
Target: 5'- cGGccgUGCCgggGCUGGCCGGAGCcCggcccgCCGCg -3' miRNA: 3'- -CCa--GCGG---CGGCCGGUCUCGaGa-----GGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 69208 | 0.67 | 0.588988 |
Target: 5'- gGGU-GCCGCagGGCCaaaaGGAGCgccccggccggCUCCGCg -3' miRNA: 3'- -CCAgCGGCGg-CCGG----UCUCGa----------GAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 57165 | 0.67 | 0.588988 |
Target: 5'- uGG-CGCC-CgGGCCGGcGCcCUCCGCc -3' miRNA: 3'- -CCaGCGGcGgCCGGUCuCGaGAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 39494 | 0.67 | 0.596813 |
Target: 5'- cGUgGCCGCgGGCCcccggagacgucGAGCUgcucccCUCCGCg -3' miRNA: 3'- cCAgCGGCGgCCGGu-----------CUCGA------GAGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 35583 | 0.67 | 0.606615 |
Target: 5'- cGG-CGCUGCucggcugCGGCCGcGGGCUCcgggggcUCCGCa -3' miRNA: 3'- -CCaGCGGCG-------GCCGGU-CUCGAG-------AGGUG- -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 71424 | 0.67 | 0.607596 |
Target: 5'- cGGaCGCCccCCGGCCAcGGGCUCagcgagaUCCAg -3' miRNA: 3'- -CCaGCGGc-GGCCGGU-CUCGAG-------AGGUg -5' |
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5364 | 5' | -61.9 | NC_001798.1 | + | 2874 | 0.67 | 0.569515 |
Target: 5'- --cUGCCGCCGGCCAcgcgcAGgUCcCCGCg -3' miRNA: 3'- ccaGCGGCGGCCGGUc----UCgAGaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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