miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 5' -61.9 NC_001798.1 + 3098 0.66 0.638066
Target:  5'- --cCGCgGCaggCGGCCAG-GCaCUCCACg -3'
miRNA:   3'- ccaGCGgCG---GCCGGUCuCGaGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 8953 0.66 0.638066
Target:  5'- gGGUgGCCGCCGGaCCuuuauGcGC-CUCgGCg -3'
miRNA:   3'- -CCAgCGGCGGCC-GGu----CuCGaGAGgUG- -5'
5364 5' -61.9 NC_001798.1 + 26377 0.66 0.638066
Target:  5'- ---gGCCG-CGGCgGGAGUUCUgCGCg -3'
miRNA:   3'- ccagCGGCgGCCGgUCUCGAGAgGUG- -5'
5364 5' -61.9 NC_001798.1 + 126329 0.66 0.638066
Target:  5'- gGGUccCGCCGCCGauccaGCUuccgGGAGCggCUUCGCg -3'
miRNA:   3'- -CCA--GCGGCGGC-----CGG----UCUCGa-GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 15565 0.66 0.637082
Target:  5'- cGUUGCCGCC-GCCgcggcggGGAGUggcgacgaCUCCACg -3'
miRNA:   3'- cCAGCGGCGGcCGG-------UCUCGa-------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 3375 0.66 0.629215
Target:  5'- cGUCGCCGCCGucGUCGgGGGUUCgcgccccggucagcgCCGCg -3'
miRNA:   3'- cCAGCGGCGGC--CGGU-CUCGAGa--------------GGUG- -5'
5364 5' -61.9 NC_001798.1 + 24207 0.66 0.628231
Target:  5'- cGGcCGCCG-UGGCCAuGAGC-CgCCGCu -3'
miRNA:   3'- -CCaGCGGCgGCCGGU-CUCGaGaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 93300 0.66 0.628231
Target:  5'- uGGcgcgCGCCGCgGGCCucguGGGCg--CCAUg -3'
miRNA:   3'- -CCa---GCGGCGgCCGGu---CUCGagaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 18304 0.66 0.628231
Target:  5'- -cUCGCCGggaaGGCCGGGGCcguguuugUCUCCGg -3'
miRNA:   3'- ccAGCGGCgg--CCGGUCUCG--------AGAGGUg -5'
5364 5' -61.9 NC_001798.1 + 38481 0.67 0.617416
Target:  5'- --gCGCaCGCCGGCaucgcccCGGAG-UCUCCGCc -3'
miRNA:   3'- ccaGCG-GCGGCCG-------GUCUCgAGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 71424 0.67 0.607596
Target:  5'- cGGaCGCCccCCGGCCAcGGGCUCagcgagaUCCAg -3'
miRNA:   3'- -CCaGCGGc-GGCCGGU-CUCGAG-------AGGUg -5'
5364 5' -61.9 NC_001798.1 + 35583 0.67 0.606615
Target:  5'- cGG-CGCUGCucggcugCGGCCGcGGGCUCcgggggcUCCGCa -3'
miRNA:   3'- -CCaGCGGCG-------GCCGGU-CUCGAG-------AGGUG- -5'
5364 5' -61.9 NC_001798.1 + 39494 0.67 0.596813
Target:  5'- cGUgGCCGCgGGCCcccggagacgucGAGCUgcucccCUCCGCg -3'
miRNA:   3'- cCAgCGGCGgCCGGu-----------CUCGA------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 57165 0.67 0.588988
Target:  5'- uGG-CGCC-CgGGCCGGcGCcCUCCGCc -3'
miRNA:   3'- -CCaGCGGcGgCCGGUCuCGaGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 69208 0.67 0.588988
Target:  5'- gGGU-GCCGCagGGCCaaaaGGAGCgccccggccggCUCCGCg -3'
miRNA:   3'- -CCAgCGGCGg-CCGG----UCUCGa----------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 24669 0.67 0.579234
Target:  5'- cGGccgUGCCgggGCUGGCCGGAGCcCggcccgCCGCg -3'
miRNA:   3'- -CCa--GCGG---CGGCCGGUCUCGaGa-----GGUG- -5'
5364 5' -61.9 NC_001798.1 + 24909 0.67 0.579234
Target:  5'- cGG-CGCUGCCGcggagcccgcGCCugcuGAGCUCcgCCGCc -3'
miRNA:   3'- -CCaGCGGCGGC----------CGGu---CUCGAGa-GGUG- -5'
5364 5' -61.9 NC_001798.1 + 70091 0.67 0.569515
Target:  5'- cGGUCGCCauGUCGGaCAGcGCgCUCCAg -3'
miRNA:   3'- -CCAGCGG--CGGCCgGUCuCGaGAGGUg -5'
5364 5' -61.9 NC_001798.1 + 23680 0.67 0.569515
Target:  5'- cGGUgGCCgGCCGcgacGCCAcGGGCcgCUUCACg -3'
miRNA:   3'- -CCAgCGG-CGGC----CGGU-CUCGa-GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 2874 0.67 0.569515
Target:  5'- --cUGCCGCCGGCCAcgcgcAGgUCcCCGCg -3'
miRNA:   3'- ccaGCGGCGGCCGGUc----UCgAGaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.