miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5368 3' -48.5 NC_001798.1 + 67802 0.66 0.999438
Target:  5'- cGGCcgacagGAACGCAACAggaaUCGGugggcGAAGACGuGAg -3'
miRNA:   3'- -CCG------CUUGUGUUGU----AGCC-----CUUUUGC-CU- -5'
5368 3' -48.5 NC_001798.1 + 93781 0.66 0.999438
Target:  5'- cGCGAGCGCcGCccggggggccAUUGGGGucuCGGAa -3'
miRNA:   3'- cCGCUUGUGuUG----------UAGCCCUuuuGCCU- -5'
5368 3' -48.5 NC_001798.1 + 132031 0.66 0.999438
Target:  5'- gGGCGAAaagaacguuCACGugguCAUCGGGGAGuacgccaugccCGGAu -3'
miRNA:   3'- -CCGCUU---------GUGUu---GUAGCCCUUUu----------GCCU- -5'
5368 3' -48.5 NC_001798.1 + 136972 0.66 0.999438
Target:  5'- cGGUGcAGCAgAACGagGGGggGcACGGc -3'
miRNA:   3'- -CCGC-UUGUgUUGUagCCCuuU-UGCCu -5'
5368 3' -48.5 NC_001798.1 + 146290 0.66 0.999438
Target:  5'- aGGcCGAGCggggaguggGCGGCcgggCGGGAGgauGGCGGAg -3'
miRNA:   3'- -CC-GCUUG---------UGUUGua--GCCCUU---UUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 39686 0.66 0.999438
Target:  5'- cGGCGAccuCGCcgcccGCcUCGGGGAuGCGGu -3'
miRNA:   3'- -CCGCUu--GUGu----UGuAGCCCUUuUGCCu -5'
5368 3' -48.5 NC_001798.1 + 108893 0.66 0.999438
Target:  5'- uGCGcGCGCGAUA-CGGGAAGggcuucAUGGGg -3'
miRNA:   3'- cCGCuUGUGUUGUaGCCCUUU------UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 25584 0.66 0.999304
Target:  5'- gGGCGAGgACcuGGCcgCGGGccgcgccgGGGGCGGGc -3'
miRNA:   3'- -CCGCUUgUG--UUGuaGCCC--------UUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 28382 0.66 0.999304
Target:  5'- cGCGGACGCGccGCG-CGGGAAGguACGc- -3'
miRNA:   3'- cCGCUUGUGU--UGUaGCCCUUU--UGCcu -5'
5368 3' -48.5 NC_001798.1 + 29657 0.66 0.999304
Target:  5'- uGCGAGCgacggaGCGGCGgcccggCGGGAGGA-GGAg -3'
miRNA:   3'- cCGCUUG------UGUUGUa-----GCCCUUUUgCCU- -5'
5368 3' -48.5 NC_001798.1 + 56049 0.66 0.999304
Target:  5'- cGCGGGCuugAAUAUCGGG---GCGGGg -3'
miRNA:   3'- cCGCUUGug-UUGUAGCCCuuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 95303 0.66 0.999304
Target:  5'- uGUGuGCGCGGCGUCGagucucGggGGCGGGg -3'
miRNA:   3'- cCGCuUGUGUUGUAGCc-----CuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 112438 0.66 0.999304
Target:  5'- cGGCGAGcCACGggGCGgacUUGGGggGG-GGAa -3'
miRNA:   3'- -CCGCUU-GUGU--UGU---AGCCCuuUUgCCU- -5'
5368 3' -48.5 NC_001798.1 + 36938 0.67 0.999144
Target:  5'- gGGCuGGGCAUGcccacGCAUgcaGGGAuGACGGAg -3'
miRNA:   3'- -CCG-CUUGUGU-----UGUAg--CCCUuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 9149 0.67 0.999144
Target:  5'- cGCGGGCGCGGCGccgcccgcgcCGGGggGcagggucucugGCGGGu -3'
miRNA:   3'- cCGCUUGUGUUGUa---------GCCCuuU-----------UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 11330 0.67 0.999144
Target:  5'- cGUGGACgacgacgaACGGCGUCGGGGuu-UGGGg -3'
miRNA:   3'- cCGCUUG--------UGUUGUAGCCCUuuuGCCU- -5'
5368 3' -48.5 NC_001798.1 + 53300 0.67 0.999144
Target:  5'- cGGCGccgauCGCAGCGUCcGGcuGGCGGc -3'
miRNA:   3'- -CCGCuu---GUGUUGUAGcCCuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 93366 0.67 0.999144
Target:  5'- aGGUGG--ACGACGcCGGGccGGCGGAc -3'
miRNA:   3'- -CCGCUugUGUUGUaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 76576 0.67 0.998953
Target:  5'- cGGCGAccggccccGCGCcguACGUCGacGggGGCGGGc -3'
miRNA:   3'- -CCGCU--------UGUGu--UGUAGCc-CuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 154277 0.67 0.998953
Target:  5'- uGGCGuGCGCAGCc-CGGGccguguuGCGGGc -3'
miRNA:   3'- -CCGCuUGUGUUGuaGCCCuuu----UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.