miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5373 3' -60.7 NC_001798.1 + 31601 0.66 0.761787
Target:  5'- cGcCCCGCG-CGUCCGGaguccGCcCCGCGCc -3'
miRNA:   3'- cC-GGGUGCaGCAGGUC-----CGaGGCGUGc -5'
5373 3' -60.7 NC_001798.1 + 76037 0.66 0.761787
Target:  5'- gGGCCC-CGagGccaUCCAGGCgCgGCugGa -3'
miRNA:   3'- -CCGGGuGCagC---AGGUCCGaGgCGugC- -5'
5373 3' -60.7 NC_001798.1 + 43001 0.66 0.761787
Target:  5'- uGGCCCcCGaCGgCCAGGCcgCCcggggggaGCGCGg -3'
miRNA:   3'- -CCGGGuGCaGCaGGUCCGa-GG--------CGUGC- -5'
5373 3' -60.7 NC_001798.1 + 75151 0.66 0.758137
Target:  5'- gGGCCCGCGagcccgucgucgcCGUCCGuGCUCgagaCGCugGg -3'
miRNA:   3'- -CCGGGUGCa------------GCAGGUcCGAG----GCGugC- -5'
5373 3' -60.7 NC_001798.1 + 90324 0.66 0.752631
Target:  5'- uGGCCCccuCGaCGgCCAGGUugUCCGC-CGu -3'
miRNA:   3'- -CCGGGu--GCaGCaGGUCCG--AGGCGuGC- -5'
5373 3' -60.7 NC_001798.1 + 137926 0.66 0.752631
Target:  5'- cGGCCCGCGccuccccCGgccgCCcGGUccgCCGCGCGc -3'
miRNA:   3'- -CCGGGUGCa------GCa---GGuCCGa--GGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 2118 0.66 0.752631
Target:  5'- cGGCCCGCGg---CCAGGUcCuCGCcCGg -3'
miRNA:   3'- -CCGGGUGCagcaGGUCCGaG-GCGuGC- -5'
5373 3' -60.7 NC_001798.1 + 75260 0.66 0.752631
Target:  5'- uGGCcgCCACGgcgGUCC-GGCUCgcggCGCGCGa -3'
miRNA:   3'- -CCG--GGUGCag-CAGGuCCGAG----GCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 81831 0.66 0.752631
Target:  5'- cGCCC-CGUCG-CC--GCuUCCGCGCGu -3'
miRNA:   3'- cCGGGuGCAGCaGGucCG-AGGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 143943 0.66 0.743377
Target:  5'- aGCCCAC-UUuUCCAGGCagCCGCGg- -3'
miRNA:   3'- cCGGGUGcAGcAGGUCCGa-GGCGUgc -5'
5373 3' -60.7 NC_001798.1 + 153427 0.66 0.743377
Target:  5'- aGGaCCCcCGUCGggCCAGGC---GCGCGg -3'
miRNA:   3'- -CC-GGGuGCAGCa-GGUCCGaggCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 152236 0.66 0.743377
Target:  5'- cGGCggCCGC-UCGgggCCGGGgUCCGCcCGg -3'
miRNA:   3'- -CCG--GGUGcAGCa--GGUCCgAGGCGuGC- -5'
5373 3' -60.7 NC_001798.1 + 125367 0.66 0.737782
Target:  5'- cGCCCccugaguuGCGcCGgcaCCAGGCUauuaaacagcaaccgCCGCGCGa -3'
miRNA:   3'- cCGGG--------UGCaGCa--GGUCCGA---------------GGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 106669 0.66 0.734034
Target:  5'- cGCCUGCGuUCGgUCAGGCUgcUCGUGCGa -3'
miRNA:   3'- cCGGGUGC-AGCaGGUCCGA--GGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 77409 0.66 0.734034
Target:  5'- cGGCcgccgaCCugGUaGUCCAGGCgcgCCGgGCc -3'
miRNA:   3'- -CCG------GGugCAgCAGGUCCGa--GGCgUGc -5'
5373 3' -60.7 NC_001798.1 + 2551 0.66 0.734034
Target:  5'- cGGCCCccGCGggaggggCGgCCgcggggcgggGGGCgUCCGCGCGg -3'
miRNA:   3'- -CCGGG--UGCa------GCaGG----------UCCG-AGGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 20414 0.66 0.733096
Target:  5'- uGGCgUAUGUaaugcagaucaagCGUCCAGGCggcuccgcUCCGCAUc -3'
miRNA:   3'- -CCGgGUGCA-------------GCAGGUCCG--------AGGCGUGc -5'
5373 3' -60.7 NC_001798.1 + 22263 0.66 0.732156
Target:  5'- cGCCCGCG----CCGGGCgcuaaugagaugCCGCGCGg -3'
miRNA:   3'- cCGGGUGCagcaGGUCCGa-----------GGCGUGC- -5'
5373 3' -60.7 NC_001798.1 + 87771 0.66 0.724611
Target:  5'- cGG-CCACGUCGUCCGGGgggUGcCACGu -3'
miRNA:   3'- -CCgGGUGCAGCAGGUCCgagGC-GUGC- -5'
5373 3' -60.7 NC_001798.1 + 83661 0.66 0.724611
Target:  5'- cGGCUCGCGggCGUCUGGGa--UGCACu -3'
miRNA:   3'- -CCGGGUGCa-GCAGGUCCgagGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.