miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5379 3' -48 NC_001798.1 + 47226 0.66 0.999555
Target:  5'- gGAAGGggUGGGCGUGUCGUugGGcGGc -3'
miRNA:   3'- -UUUUUuaGUCUGCACGGCAugCU-CCu -5'
5379 3' -48 NC_001798.1 + 15560 0.66 0.999555
Target:  5'- ------cCGGGCGuUGCCGccgccgcgGCGGGGAg -3'
miRNA:   3'- uuuuuuaGUCUGC-ACGGCa-------UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 151154 0.66 0.999555
Target:  5'- ----cGUCGucCGUGCCGggccACGGGGGg -3'
miRNA:   3'- uuuuuUAGUcuGCACGGCa---UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 134933 0.66 0.999142
Target:  5'- --cGAGUCGGcGCGUGaCCugGUGCGGGGc -3'
miRNA:   3'- uuuUUUAGUC-UGCAC-GG--CAUGCUCCu -5'
5379 3' -48 NC_001798.1 + 26488 0.66 0.999142
Target:  5'- ----cGUCGGccGCGgGCCGcGCGGGGAc -3'
miRNA:   3'- uuuuuUAGUC--UGCaCGGCaUGCUCCU- -5'
5379 3' -48 NC_001798.1 + 104382 0.66 0.999087
Target:  5'- ----uGUCgAGGCGguccgcguacacguUGCCGUucGCGAGGAg -3'
miRNA:   3'- uuuuuUAG-UCUGC--------------ACGGCA--UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 27031 0.67 0.998946
Target:  5'- cGGGGGUCGGGCGggcgGCaCGUcucccgcgcccGCGGGGGg -3'
miRNA:   3'- uUUUUUAGUCUGCa---CG-GCA-----------UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 119351 0.67 0.998946
Target:  5'- -cGAAcgCAGGC-UGCCGcuuUACGAGGc -3'
miRNA:   3'- uuUUUuaGUCUGcACGGC---AUGCUCCu -5'
5379 3' -48 NC_001798.1 + 4295 0.67 0.998946
Target:  5'- cGGAGGAggAGGCGgaggacGCCGacgACGAGGAu -3'
miRNA:   3'- -UUUUUUagUCUGCa-----CGGCa--UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 4341 0.67 0.998114
Target:  5'- --uGAGUCAGAgGcgGCCGagcgccgGCGGGGGg -3'
miRNA:   3'- uuuUUUAGUCUgCa-CGGCa------UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 144579 0.67 0.997736
Target:  5'- cGAGGA-CGGGCG-GCUGggugGCGAGGGg -3'
miRNA:   3'- uUUUUUaGUCUGCaCGGCa---UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 26971 0.68 0.996787
Target:  5'- cGGGGGUCGGGCGggcggggGUCGggcggGCGGGGGu -3'
miRNA:   3'- uUUUUUAGUCUGCa------CGGCa----UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 23549 0.68 0.996787
Target:  5'- cGAGGAggCGGGgGUGCCc-GCGAGGGc -3'
miRNA:   3'- -UUUUUuaGUCUgCACGGcaUGCUCCU- -5'
5379 3' -48 NC_001798.1 + 26807 0.68 0.996787
Target:  5'- cGGGGGUCGGGCGggcggggGUCGggcggGCGGGGGu -3'
miRNA:   3'- uUUUUUAGUCUGCa------CGGCa----UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 26852 0.68 0.996787
Target:  5'- cGGGGGUCGGGCGggcggggGUCGggcggGCGGGGGu -3'
miRNA:   3'- uUUUUUAGUCUGCa------CGGCa----UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 123916 0.68 0.996787
Target:  5'- --cGAAUCcgGGGCGUGCUGUGCccuggguccGGGGGc -3'
miRNA:   3'- uuuUUUAG--UCUGCACGGCAUG---------CUCCU- -5'
5379 3' -48 NC_001798.1 + 106679 0.68 0.995532
Target:  5'- ---cGGUCAGGC-UGCuCGUGCGAGcGGg -3'
miRNA:   3'- uuuuUUAGUCUGcACG-GCAUGCUC-CU- -5'
5379 3' -48 NC_001798.1 + 40480 0.68 0.99546
Target:  5'- cGGAAGUCGGACGagccUGCCuGUGCugggccgGGGGAg -3'
miRNA:   3'- uUUUUUAGUCUGC----ACGG-CAUG-------CUCCU- -5'
5379 3' -48 NC_001798.1 + 26927 0.69 0.993903
Target:  5'- cGGGGGUCGGGCGggcgggGUCGggcggGCGGGGGu -3'
miRNA:   3'- uUUUUUAGUCUGCa-----CGGCa----UGCUCCU- -5'
5379 3' -48 NC_001798.1 + 93475 0.69 0.990599
Target:  5'- cGAGGGcCAcGugGUGCCcggGUACGAGGGg -3'
miRNA:   3'- uUUUUUaGU-CugCACGG---CAUGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.