miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5379 5' -53 NC_001798.1 + 27036 0.66 0.981661
Target:  5'- -gUCGggCGGGCGGCAcgUCUCCcgcgCCc -3'
miRNA:   3'- caAGUa-GCUCGCCGUcaAGAGGca--GG- -5'
5379 5' -53 NC_001798.1 + 4774 0.66 0.978121
Target:  5'- --gCAUCG-GCGGCGGcgucgucggccucgUCUUCGUUCu -3'
miRNA:   3'- caaGUAGCuCGCCGUCa-------------AGAGGCAGG- -5'
5379 5' -53 NC_001798.1 + 53184 0.66 0.977162
Target:  5'- -gUCccCGAGCGGCGcaUCUUCG-CCg -3'
miRNA:   3'- caAGuaGCUCGCCGUcaAGAGGCaGG- -5'
5379 5' -53 NC_001798.1 + 82191 0.66 0.976917
Target:  5'- --gCAgCG-GCGGCAGUgccgccuUCUCCGggCCu -3'
miRNA:   3'- caaGUaGCuCGCCGUCA-------AGAGGCa-GG- -5'
5379 5' -53 NC_001798.1 + 66500 0.66 0.976671
Target:  5'- -cUCAgCGAGCGcGUAGUUCaggagcccaaagUCGUCCu -3'
miRNA:   3'- caAGUaGCUCGC-CGUCAAGa-----------GGCAGG- -5'
5379 5' -53 NC_001798.1 + 127271 0.66 0.971899
Target:  5'- --aCGUCGGGCuGGCGGUcgaUCUCuaCGcCCu -3'
miRNA:   3'- caaGUAGCUCG-CCGUCA---AGAG--GCaGG- -5'
5379 5' -53 NC_001798.1 + 24410 0.66 0.971899
Target:  5'- --cCGUCG-GCGGCGGcgUCgCCGgCCg -3'
miRNA:   3'- caaGUAGCuCGCCGUCa-AGaGGCaGG- -5'
5379 5' -53 NC_001798.1 + 91259 0.66 0.971899
Target:  5'- aGUUCugccggCGgcaaGGCGGCGGUg--CCGUCUg -3'
miRNA:   3'- -CAAGua----GC----UCGCCGUCAagaGGCAGG- -5'
5379 5' -53 NC_001798.1 + 134721 0.66 0.968963
Target:  5'- cUUCGU-GAGCccGGCgacgGGUUCUCCGcCCc -3'
miRNA:   3'- cAAGUAgCUCG--CCG----UCAAGAGGCaGG- -5'
5379 5' -53 NC_001798.1 + 131513 0.66 0.967729
Target:  5'- ---gAUCGAGCGGCAGcaacacggacCCGUCa -3'
miRNA:   3'- caagUAGCUCGCCGUCaaga------GGCAGg -5'
5379 5' -53 NC_001798.1 + 102035 0.67 0.965815
Target:  5'- -gUgGUUGGGCGGgGG-UCUCCGUg- -3'
miRNA:   3'- caAgUAGCUCGCCgUCaAGAGGCAgg -5'
5379 5' -53 NC_001798.1 + 103441 0.67 0.965815
Target:  5'- cGUUgAUCG-GCaGGgGGUUCUCCGgaggcagggCCg -3'
miRNA:   3'- -CAAgUAGCuCG-CCgUCAAGAGGCa--------GG- -5'
5379 5' -53 NC_001798.1 + 1495 0.67 0.962448
Target:  5'- --gCGUCGcccgcgcccgaGGCGGCGGcccggCCGUCCa -3'
miRNA:   3'- caaGUAGC-----------UCGCCGUCaaga-GGCAGG- -5'
5379 5' -53 NC_001798.1 + 84689 0.67 0.950986
Target:  5'- cGUUCGcgcuuUCGGGCGaGCAGcUCgCCGUgCa -3'
miRNA:   3'- -CAAGU-----AGCUCGC-CGUCaAGaGGCAgG- -5'
5379 5' -53 NC_001798.1 + 79955 0.68 0.942166
Target:  5'- uGggCGUCcgGAGCGGCGGcgC-CgCGUCCg -3'
miRNA:   3'- -CaaGUAG--CUCGCCGUCaaGaG-GCAGG- -5'
5379 5' -53 NC_001798.1 + 10893 0.68 0.937393
Target:  5'- -aUguUCGGGUGGCAGgag-CCGUCg -3'
miRNA:   3'- caAguAGCUCGCCGUCaagaGGCAGg -5'
5379 5' -53 NC_001798.1 + 42045 0.68 0.927113
Target:  5'- --aCAUCGuAGCGGCccAGaacCUCCGUCa -3'
miRNA:   3'- caaGUAGC-UCGCCG--UCaa-GAGGCAGg -5'
5379 5' -53 NC_001798.1 + 35798 0.7 0.882036
Target:  5'- cUUCGUCGGGCGGCGGggggggggCGUCg -3'
miRNA:   3'- cAAGUAGCUCGCCGUCaagag---GCAGg -5'
5379 5' -53 NC_001798.1 + 117203 0.7 0.868866
Target:  5'- gGUUCAccgUCGuGCGGCAGgaccgCUUCGUgaCCg -3'
miRNA:   3'- -CAAGU---AGCuCGCCGUCaa---GAGGCA--GG- -5'
5379 5' -53 NC_001798.1 + 4865 0.7 0.853403
Target:  5'- gGUUCGgggUGGGCGGCGG---UCCGUCg -3'
miRNA:   3'- -CAAGUa--GCUCGCCGUCaagAGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.