Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 96976 | 0.68 | 0.660652 |
Target: 5'- cGCGGACCGCGGcGgGCGGcGGGGc-- -3' miRNA: 3'- uUGUCUGGCGCC-UgUGCCuCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 43665 | 0.68 | 0.660652 |
Target: 5'- uGCuGGCCGCgGGGCugGGGucguGGGuGGUCa -3' miRNA: 3'- uUGuCUGGCG-CCUGugCCU----CCC-UCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 132969 | 0.68 | 0.650591 |
Target: 5'- -cCAGGCCGCcGAgACGGAGGaGGUg -3' miRNA: 3'- uuGUCUGGCGcCUgUGCCUCCcUCAg -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 4069 | 0.68 | 0.650591 |
Target: 5'- aGGCGGcCCGCGGuCGCcGcGGGGGUCc -3' miRNA: 3'- -UUGUCuGGCGCCuGUGcCuCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 122064 | 0.68 | 0.650591 |
Target: 5'- --uGGGCgCGuCGGACGCGGAGGcGGUg -3' miRNA: 3'- uugUCUG-GC-GCCUGUGCCUCCcUCAg -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 29917 | 0.68 | 0.680699 |
Target: 5'- cGCGGGCgGUGGGCuCGGGGGcGGGa- -3' miRNA: 3'- uUGUCUGgCGCCUGuGCCUCC-CUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 8854 | 0.68 | 0.680699 |
Target: 5'- cGGCGGGCCgggaggucaucGCGGACGCGGaAGGGc--- -3' miRNA: 3'- -UUGUCUGG-----------CGCCUGUGCC-UCCCucag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 27009 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26979 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26949 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26905 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26875 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26845 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26815 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 36312 | 0.68 | 0.680699 |
Target: 5'- cGGCGGGgCGCGGGC-CGGGGccGGGGcUCg -3' miRNA: 3'- -UUGUCUgGCGCCUGuGCCUC--CCUC-AG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 125654 | 0.69 | 0.590193 |
Target: 5'- cGCGGGCgagGCGGGgGCGGcugaggucaGGGGGGUCg -3' miRNA: 3'- uUGUCUGg--CGCCUgUGCC---------UCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 16174 | 0.69 | 0.610282 |
Target: 5'- gGGCGGcCCGCGGGgAcCGGGGGGAc-- -3' miRNA: 3'- -UUGUCuGGCGCCUgU-GCCUCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 30173 | 0.69 | 0.610282 |
Target: 5'- gGAgGGACacgGgGGACACGGcgcGGGGGUCc -3' miRNA: 3'- -UUgUCUGg--CgCCUGUGCCu--CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 2998 | 0.69 | 0.620354 |
Target: 5'- cGCGGGCCcCGGGCGCGGGGGcgcggcGGGcCg -3' miRNA: 3'- uUGUCUGGcGCCUGUGCCUCC------CUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 54384 | 0.69 | 0.620354 |
Target: 5'- cGGgGGGCCGCGG-CGCGGucggcGGGAGc- -3' miRNA: 3'- -UUgUCUGGCGCCuGUGCCu----CCCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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