Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5382 | 3' | -58.9 | NC_001798.1 | + | 57546 | 0.75 | 0.282933 |
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Target: 5'- gGGCGGAugcguuCCGCGGggACGCGGAGGGGG-Cg -3' miRNA: 3'- -UUGUCU------GGCGCC--UGUGCCUCCCUCaG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 61006 | 0.75 | 0.310039 |
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Target: 5'- gGGCGGAUgaCGCGGAC-CGGAuGGGGGUUa -3' miRNA: 3'- -UUGUCUG--GCGCCUGuGCCU-CCCUCAG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 129290 | 0.76 | 0.251733 |
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Target: 5'- cGGCAGGCaccgCGCGGGCGCGGAGGaGGG-Cg -3' miRNA: 3'- -UUGUCUG----GCGCCUGUGCCUCC-CUCaG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 6582 | 0.77 | 0.234407 |
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Target: 5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3' miRNA: 3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 6540 | 0.77 | 0.234407 |
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Target: 5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3' miRNA: 3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 27534 | 0.78 | 0.188375 |
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Target: 5'- aGGCAGccCCGCGGcGCGCGGGGGGAGg- -3' miRNA: 3'- -UUGUCu-GGCGCC-UGUGCCUCCCUCag -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 27182 | 0.88 | 0.042819 |
|
Target: 5'- --gGGGCCGCGGGCGCGGGGGGAGg- -3' miRNA: 3'- uugUCUGGCGCCUGUGCCUCCCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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