miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 26362 0.7 0.560298
Target:  5'- cGGCGGAgcugCGCGGGcCGCGGcGGGAGUUc -3'
miRNA:   3'- -UUGUCUg---GCGCCU-GUGCCuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 49397 0.7 0.530836
Target:  5'- cGCGGugaGCUGCGGGCGCGGGaGGAGa- -3'
miRNA:   3'- uUGUC---UGGCGCCUGUGCCUcCCUCag -5'
5382 3' -58.9 NC_001798.1 + 100986 0.7 0.570222
Target:  5'- --gGGGgCGUGGGCGgGGAGGGGGa- -3'
miRNA:   3'- uugUCUgGCGCCUGUgCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 153498 0.7 0.540599
Target:  5'- aAGCAcACCuGCGGGCGgGGAgacacGGGGGUCg -3'
miRNA:   3'- -UUGUcUGG-CGCCUGUgCCU-----CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 48683 0.7 0.521138
Target:  5'- gGACGGGCCGCccGGA-GCGGuGGGGaAGUCa -3'
miRNA:   3'- -UUGUCUGGCG--CCUgUGCC-UCCC-UCAG- -5'
5382 3' -58.9 NC_001798.1 + 152509 0.7 0.521138
Target:  5'- cGCGcGCCccgGCGGGgGCGGAGGGAGg- -3'
miRNA:   3'- uUGUcUGG---CGCCUgUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 6399 0.7 0.560298
Target:  5'- cGGgGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUgUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 16174 0.69 0.610282
Target:  5'- gGGCGGcCCGCGGGgAcCGGGGGGAc-- -3'
miRNA:   3'- -UUGUCuGGCGCCUgU-GCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 30173 0.69 0.610282
Target:  5'- gGAgGGACacgGgGGACACGGcgcGGGGGUCc -3'
miRNA:   3'- -UUgUCUGg--CgCCUGUGCCu--CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 54384 0.69 0.620354
Target:  5'- cGGgGGGCCGCGG-CGCGGucggcGGGAGc- -3'
miRNA:   3'- -UUgUCUGGCGCCuGUGCCu----CCCUCag -5'
5382 3' -58.9 NC_001798.1 + 2998 0.69 0.620354
Target:  5'- cGCGGGCCcCGGGCGCGGGGGcgcggcGGGcCg -3'
miRNA:   3'- uUGUCUGGcGCCUGUGCCUCC------CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 125654 0.69 0.590193
Target:  5'- cGCGGGCgagGCGGGgGCGGcugaggucaGGGGGGUCg -3'
miRNA:   3'- uUGUCUGg--CGCCUgUGCC---------UCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 4069 0.68 0.650591
Target:  5'- aGGCGGcCCGCGGuCGCcGcGGGGGUCc -3'
miRNA:   3'- -UUGUCuGGCGCCuGUGcCuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 96976 0.68 0.660652
Target:  5'- cGCGGACCGCGGcGgGCGGcGGGGc-- -3'
miRNA:   3'- uUGUCUGGCGCC-UgUGCCuCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 26624 0.68 0.680699
Target:  5'- cGACGGACUGUuugggGaGugACGGGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCG-----C-CugUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 122064 0.68 0.650591
Target:  5'- --uGGGCgCGuCGGACGCGGAGGcGGUg -3'
miRNA:   3'- uugUCUG-GC-GCCUGUGCCUCCcUCAg -5'
5382 3' -58.9 NC_001798.1 + 29917 0.68 0.680699
Target:  5'- cGCGGGCgGUGGGCuCGGGGGcGGGa- -3'
miRNA:   3'- uUGUCUGgCGCCUGuGCCUCC-CUCag -5'
5382 3' -58.9 NC_001798.1 + 43665 0.68 0.660652
Target:  5'- uGCuGGCCGCgGGGCugGGGucguGGGuGGUCa -3'
miRNA:   3'- uUGuCUGGCG-CCUGugCCU----CCC-UCAG- -5'
5382 3' -58.9 NC_001798.1 + 27268 0.68 0.670691
Target:  5'- cGCAGccCCGUGGcGCGCGGGgGGGAGg- -3'
miRNA:   3'- uUGUCu-GGCGCC-UGUGCCU-CCCUCag -5'
5382 3' -58.9 NC_001798.1 + 132969 0.68 0.650591
Target:  5'- -cCAGGCCGCcGAgACGGAGGaGGUg -3'
miRNA:   3'- uuGUCUGGCGcCUgUGCCUCCcUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.