Results 41 - 60 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 96976 | 0.68 | 0.660652 |
Target: 5'- cGCGGACCGCGGcGgGCGGcGGGGc-- -3' miRNA: 3'- uUGUCUGGCGCC-UgUGCCuCCCUcag -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 43665 | 0.68 | 0.660652 |
Target: 5'- uGCuGGCCGCgGGGCugGGGucguGGGuGGUCa -3' miRNA: 3'- uUGuCUGGCG-CCUGugCCU----CCC-UCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26815 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26845 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26875 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26905 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26949 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 26979 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 4069 | 0.68 | 0.650591 |
Target: 5'- aGGCGGcCCGCGGuCGCcGcGGGGGUCc -3' miRNA: 3'- -UUGUCuGGCGCCuGUGcCuCCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 27009 | 0.68 | 0.690669 |
Target: 5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 150631 | 0.67 | 0.739634 |
Target: 5'- --uGGGCCGCGcGGggcugucuCGCGGGGGGcGUCc -3' miRNA: 3'- uugUCUGGCGC-CU--------GUGCCUCCCuCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 55985 | 0.67 | 0.739634 |
Target: 5'- gGGgAGGCCGCGGGgGCGaGGGGcugguaggcGGGUCc -3' miRNA: 3'- -UUgUCUGGCGCCUgUGC-CUCC---------CUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 79276 | 0.67 | 0.739634 |
Target: 5'- cGGCGG-CCGCGGACcuggccccguggGCGGuGGaGGAGUUc -3' miRNA: 3'- -UUGUCuGGCGCCUG------------UGCC-UC-CCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 41432 | 0.67 | 0.739634 |
Target: 5'- uAGCAGA-CGCGGGCGUGG-GGG-GUCc -3' miRNA: 3'- -UUGUCUgGCGCCUGUGCCuCCCuCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 86259 | 0.67 | 0.739634 |
Target: 5'- aAGCAcGGCCGgGGGCGCGGgcgcaccggcGGGGAa-- -3' miRNA: 3'- -UUGU-CUGGCgCCUGUGCC----------UCCCUcag -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 79371 | 0.67 | 0.720259 |
Target: 5'- --aGGGCCGgcggccagaCGGGCGCGGGcGcGGAGUCc -3' miRNA: 3'- uugUCUGGC---------GCCUGUGCCU-C-CCUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 34620 | 0.67 | 0.729988 |
Target: 5'- --aGGGCgGCGGcgGCGGGGGGGGg- -3' miRNA: 3'- uugUCUGgCGCCugUGCCUCCCUCag -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 150576 | 0.67 | 0.729988 |
Target: 5'- cGCGGGgcggCGCGGAgacgGCGGGGGaGAGUCg -3' miRNA: 3'- uUGUCUg---GCGCCUg---UGCCUCC-CUCAG- -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 15371 | 0.67 | 0.720259 |
Target: 5'- gAAUcGGCCGUGGGCGCGGc-GGAGg- -3' miRNA: 3'- -UUGuCUGGCGCCUGUGCCucCCUCag -5' |
|||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 27222 | 0.67 | 0.739634 |
Target: 5'- gGGCGGGgCGCGGGggaggcggcCGCGG-GGGAGg- -3' miRNA: 3'- -UUGUCUgGCGCCU---------GUGCCuCCCUCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home