Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 86259 | 0.67 | 0.739634 |
Target: 5'- aAGCAcGGCCGgGGGCGCGGgcgcaccggcGGGGAa-- -3' miRNA: 3'- -UUGU-CUGGCgCCUGUGCC----------UCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 34620 | 0.67 | 0.729988 |
Target: 5'- --aGGGCgGCGGcgGCGGGGGGGGg- -3' miRNA: 3'- uugUCUGgCGCCugUGCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 130698 | 0.67 | 0.700591 |
Target: 5'- cAACgAGACCGCGGcggcggccguGCACaGGAGGGuGcCc -3' miRNA: 3'- -UUG-UCUGGCGCC----------UGUG-CCUCCCuCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 79371 | 0.67 | 0.720259 |
Target: 5'- --aGGGCCGgcggccagaCGGGCGCGGGcGcGGAGUCc -3' miRNA: 3'- uugUCUGGC---------GCCUGUGCCU-C-CCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 139934 | 0.67 | 0.700591 |
Target: 5'- aAGCGGGCCcugGCGGcGCACGGGGGcGAa-- -3' miRNA: 3'- -UUGUCUGG---CGCC-UGUGCCUCC-CUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 15054 | 0.67 | 0.710457 |
Target: 5'- gGAUGGGCC-CGGggcGCGCGGGGGGuGGUUu -3' miRNA: 3'- -UUGUCUGGcGCC---UGUGCCUCCC-UCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 153667 | 0.67 | 0.710457 |
Target: 5'- cGCGGcgcguCCGCGGGCGgGGAcgcGGGGGcCg -3' miRNA: 3'- uUGUCu----GGCGCCUGUgCCU---CCCUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 28760 | 0.67 | 0.720259 |
Target: 5'- --aAGACgGCGGACccGCGGAGgaGGAGg- -3' miRNA: 3'- uugUCUGgCGCCUG--UGCCUC--CCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 30949 | 0.67 | 0.720259 |
Target: 5'- gGGCGGGggGCGGGCGgggguCGGGcGGGGGUCg -3' miRNA: 3'- -UUGUCUggCGCCUGU-----GCCU-CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 15371 | 0.67 | 0.720259 |
Target: 5'- gAAUcGGCCGUGGGCGCGGc-GGAGg- -3' miRNA: 3'- -UUGuCUGGCGCCUGUGCCucCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 150576 | 0.67 | 0.729988 |
Target: 5'- cGCGGGgcggCGCGGAgacgGCGGGGGaGAGUCg -3' miRNA: 3'- uUGUCUg---GCGCCUg---UGCCUCC-CUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 30034 | 0.66 | 0.783608 |
Target: 5'- aGGCAGggaggagcccgagaGCgGgGGACAgGGGGGGAGa- -3' miRNA: 3'- -UUGUC--------------UGgCgCCUGUgCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 96035 | 0.66 | 0.795295 |
Target: 5'- gGGCGGGCgGgCGGGCgACGGgcauaaagaGGGGAuGUCa -3' miRNA: 3'- -UUGUCUGgC-GCCUG-UGCC---------UCCCU-CAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 27143 | 0.66 | 0.795295 |
Target: 5'- --aAGGCaCG-GGGCGCgGGAGGGAGg- -3' miRNA: 3'- uugUCUG-GCgCCUGUG-CCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 5912 | 0.66 | 0.795295 |
Target: 5'- aGGCGGGCC-CGGACG-GGGGGcGGGcCg -3' miRNA: 3'- -UUGUCUGGcGCCUGUgCCUCC-CUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 151279 | 0.66 | 0.786326 |
Target: 5'- cGCAcGGCCGCcucGGccuccACGCGGGuccGGGGGUCg -3' miRNA: 3'- uUGU-CUGGCG---CC-----UGUGCCU---CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 58983 | 0.66 | 0.777222 |
Target: 5'- cGGCGG-CCGgGcGaACGCGGGGGGGG-Cg -3' miRNA: 3'- -UUGUCuGGCgC-C-UGUGCCUCCCUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 150857 | 0.66 | 0.767992 |
Target: 5'- -uCGGgucGCgGCGGGCugGGAGGuuccgcGGGUCg -3' miRNA: 3'- uuGUC---UGgCGCCUGugCCUCC------CUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 15884 | 0.66 | 0.758645 |
Target: 5'- cGCAGggcgcgucgaaACCGCGGGCGgGGuGGGAa-- -3' miRNA: 3'- uUGUC-----------UGGCGCCUGUgCCuCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6231 | 0.66 | 0.758645 |
Target: 5'- gGGCcGGCCGgGGGgACGGGcGGGGGa- -3' miRNA: 3'- -UUGuCUGGCgCCUgUGCCU-CCCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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