Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5382 | 3' | -58.9 | NC_001798.1 | + | 100986 | 0.7 | 0.570222 |
Target: 5'- --gGGGgCGUGGGCGgGGAGGGGGa- -3' miRNA: 3'- uugUCUgGCGCCUGUgCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6399 | 0.7 | 0.560298 |
Target: 5'- cGGgGGGCCGgGGGgACGGGGGGAc-- -3' miRNA: 3'- -UUgUCUGGCgCCUgUGCCUCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 26362 | 0.7 | 0.560298 |
Target: 5'- cGGCGGAgcugCGCGGGcCGCGGcGGGAGUUc -3' miRNA: 3'- -UUGUCUg---GCGCCU-GUGCCuCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 153498 | 0.7 | 0.540599 |
Target: 5'- aAGCAcACCuGCGGGCGgGGAgacacGGGGGUCg -3' miRNA: 3'- -UUGUcUGG-CGCCUGUgCCU-----CCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 49397 | 0.7 | 0.530836 |
Target: 5'- cGCGGugaGCUGCGGGCGCGGGaGGAGa- -3' miRNA: 3'- uUGUC---UGGCGCCUGUGCCUcCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 152509 | 0.7 | 0.521138 |
Target: 5'- cGCGcGCCccgGCGGGgGCGGAGGGAGg- -3' miRNA: 3'- uUGUcUGG---CGCCUgUGCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 48683 | 0.7 | 0.521138 |
Target: 5'- gGACGGGCCGCccGGA-GCGGuGGGGaAGUCa -3' miRNA: 3'- -UUGUCUGGCG--CCUgUGCC-UCCC-UCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 5039 | 0.7 | 0.521138 |
Target: 5'- ---cGACCGgGGuguGCGgGGGGGGGGUCu -3' miRNA: 3'- uuguCUGGCgCC---UGUgCCUCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 36071 | 0.71 | 0.501956 |
Target: 5'- --gAGGCUGCGGGCGCGGgguAGGuGGGUg -3' miRNA: 3'- uugUCUGGCGCCUGUGCC---UCC-CUCAg -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 67489 | 0.71 | 0.492481 |
Target: 5'- -gUAGGCCGCgGGGC-CGGGGGGA-UCg -3' miRNA: 3'- uuGUCUGGCG-CCUGuGCCUCCCUcAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 31788 | 0.72 | 0.445535 |
Target: 5'- cGCGGGUCGggagggcCGGGCGCGGAGGGAGg- -3' miRNA: 3'- uUGUCUGGC-------GCCUGUGCCUCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 145810 | 0.72 | 0.43751 |
Target: 5'- cGGCAGAaaCGCGGGCGCGGcGGcGGUCg -3' miRNA: 3'- -UUGUCUg-GCGCCUGUGCCuCCcUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 2566 | 0.72 | 0.41998 |
Target: 5'- gGGCGG-CCGCGGG-GCGGGGGGcGUCc -3' miRNA: 3'- -UUGUCuGGCGCCUgUGCCUCCCuCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6302 | 0.73 | 0.411375 |
Target: 5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3' miRNA: 3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6263 | 0.73 | 0.411375 |
Target: 5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3' miRNA: 3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 39416 | 0.73 | 0.38541 |
Target: 5'- --gGGACCG-GGGCGCGGccguccgcgugcgGGGGGGUCa -3' miRNA: 3'- uugUCUGGCgCCUGUGCC-------------UCCCUCAG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 9657 | 0.73 | 0.377268 |
Target: 5'- cAGCGGGCCGCgcgcggaGGGCGCGGgauGGGGGGcUCu -3' miRNA: 3'- -UUGUCUGGCG-------CCUGUGCC---UCCCUC-AG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6354 | 0.73 | 0.37004 |
Target: 5'- gGACGGGCCGgGGGgACGGgccGGGGGGcCg -3' miRNA: 3'- -UUGUCUGGCgCCUgUGCC---UCCCUCaG- -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 6604 | 0.74 | 0.339077 |
Target: 5'- nACGGGCCGgGGGgACGGGGGGAc-- -3' miRNA: 3'- uUGUCUGGCgCCUgUGCCUCCCUcag -5' |
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5382 | 3' | -58.9 | NC_001798.1 | + | 22318 | 0.74 | 0.331636 |
Target: 5'- cAACGGGCCGCcgccacGGACGCGGAcgcgcGGGcGUCg -3' miRNA: 3'- -UUGUCUGGCG------CCUGUGCCU-----CCCuCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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