Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5382 | 3' | -58.9 | NC_001798.1 | + | 150631 | 0.67 | 0.739634 |
|
Target: 5'- --uGGGCCGCGcGGggcugucuCGCGGGGGGcGUCc -3' miRNA: 3'- uugUCUGGCGC-CU--------GUGCCUCCCuCAG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 150857 | 0.66 | 0.767992 |
|
Target: 5'- -uCGGgucGCgGCGGGCugGGAGGuuccgcGGGUCg -3' miRNA: 3'- uuGUC---UGgCGCCUGugCCUCC------CUCAG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 151279 | 0.66 | 0.786326 |
|
Target: 5'- cGCAcGGCCGCcucGGccuccACGCGGGuccGGGGGUCg -3' miRNA: 3'- uUGU-CUGGCG---CC-----UGUGCCU---CCCUCAG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 152509 | 0.7 | 0.521138 |
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Target: 5'- cGCGcGCCccgGCGGGgGCGGAGGGAGg- -3' miRNA: 3'- uUGUcUGG---CGCCUgUGCCUCCCUCag -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 153498 | 0.7 | 0.540599 |
|
Target: 5'- aAGCAcACCuGCGGGCGgGGAgacacGGGGGUCg -3' miRNA: 3'- -UUGUcUGG-CGCCUGUgCCU-----CCCUCAG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 153667 | 0.67 | 0.710457 |
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Target: 5'- cGCGGcgcguCCGCGGGCGgGGAcgcGGGGGcCg -3' miRNA: 3'- uUGUCu----GGCGCCUGUgCCU---CCCUCaG- -5' |
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| 5382 | 3' | -58.9 | NC_001798.1 | + | 153991 | 0.66 | 0.75582 |
|
Target: 5'- ---cGACCGCGGuucccgagucguacGCAgGGAccauuuGGGAGUCu -3' miRNA: 3'- uuguCUGGCGCC--------------UGUgCCU------CCCUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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