miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 26845 0.68 0.690669
Target:  5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 26815 0.68 0.690669
Target:  5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 26624 0.68 0.680699
Target:  5'- cGACGGACUGUuugggGaGugACGGGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCG-----C-CugUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 26362 0.7 0.560298
Target:  5'- cGGCGGAgcugCGCGGGcCGCGGcGGGAGUUc -3'
miRNA:   3'- -UUGUCUg---GCGCCU-GUGCCuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 22318 0.74 0.331636
Target:  5'- cAACGGGCCGCcgccacGGACGCGGAcgcgcGGGcGUCg -3'
miRNA:   3'- -UUGUCUGGCG------CCUGUGCCU-----CCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 17966 0.66 0.786326
Target:  5'- cGCAGGUC-CGGACGuCGGGGGGGGc- -3'
miRNA:   3'- uUGUCUGGcGCCUGU-GCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 16174 0.69 0.610282
Target:  5'- gGGCGGcCCGCGGGgAcCGGGGGGAc-- -3'
miRNA:   3'- -UUGUCuGGCGCCUgU-GCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 15884 0.66 0.758645
Target:  5'- cGCAGggcgcgucgaaACCGCGGGCGgGGuGGGAa-- -3'
miRNA:   3'- uUGUC-----------UGGCGCCUGUgCCuCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 15371 0.67 0.720259
Target:  5'- gAAUcGGCCGUGGGCGCGGc-GGAGg- -3'
miRNA:   3'- -UUGuCUGGCGCCUGUGCCucCCUCag -5'
5382 3' -58.9 NC_001798.1 + 15054 0.67 0.710457
Target:  5'- gGAUGGGCC-CGGggcGCGCGGGGGGuGGUUu -3'
miRNA:   3'- -UUGUCUGGcGCC---UGUGCCUCCC-UCAG- -5'
5382 3' -58.9 NC_001798.1 + 11633 0.66 0.804121
Target:  5'- cGCGGG-CGCGGGCGucccugugucccCGGGggcGGGGGUCg -3'
miRNA:   3'- uUGUCUgGCGCCUGU------------GCCU---CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 9657 0.73 0.377268
Target:  5'- cAGCGGGCCGCgcgcggaGGGCGCGGgauGGGGGGcUCu -3'
miRNA:   3'- -UUGUCUGGCG-------CCUGUGCC---UCCCUC-AG- -5'
5382 3' -58.9 NC_001798.1 + 9142 0.66 0.803245
Target:  5'- uGCGG-CaCGCGGGCGCGGcgccgcccgcgccGGGGGG-Ca -3'
miRNA:   3'- uUGUCuG-GCGCCUGUGCC-------------UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 8854 0.68 0.680699
Target:  5'- cGGCGGGCCgggaggucaucGCGGACGCGGaAGGGc--- -3'
miRNA:   3'- -UUGUCUGG-----------CGCCUGUGCC-UCCCucag -5'
5382 3' -58.9 NC_001798.1 + 6604 0.74 0.339077
Target:  5'- nACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- uUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6582 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6540 0.77 0.234407
Target:  5'- gGACGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6399 0.7 0.560298
Target:  5'- cGGgGGGCCGgGGGgACGGGGGGAc-- -3'
miRNA:   3'- -UUgUCUGGCgCCUgUGCCUCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6354 0.73 0.37004
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGcCg -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 6302 0.73 0.411375
Target:  5'- gGACGGGCCGgGGGgACGGgccGGGGGGa- -3'
miRNA:   3'- -UUGUCUGGCgCCUgUGCC---UCCCUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.