miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 27143 0.66 0.795295
Target:  5'- --aAGGCaCG-GGGCGCgGGAGGGAGg- -3'
miRNA:   3'- uugUCUG-GCgCCUGUG-CCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 96035 0.66 0.795295
Target:  5'- gGGCGGGCgGgCGGGCgACGGgcauaaagaGGGGAuGUCa -3'
miRNA:   3'- -UUGUCUGgC-GCCUG-UGCC---------UCCCU-CAG- -5'
5382 3' -58.9 NC_001798.1 + 102197 0.66 0.795295
Target:  5'- aAGCcuGGCgCGCGG-CGCGccGGGAGUCg -3'
miRNA:   3'- -UUGu-CUG-GCGCCuGUGCcuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 9142 0.66 0.803245
Target:  5'- uGCGG-CaCGCGGGCGCGGcgccgcccgcgccGGGGGG-Ca -3'
miRNA:   3'- uUGUCuG-GCGCCUGUGCC-------------UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 42177 0.66 0.804121
Target:  5'- --gGGGCCGCGGAaaaCAUGGGcGGGGcGUg -3'
miRNA:   3'- uugUCUGGCGCCU---GUGCCU-CCCU-CAg -5'
5382 3' -58.9 NC_001798.1 + 6231 0.66 0.758645
Target:  5'- gGGCcGGCCGgGGGgACGGGcGGGGGa- -3'
miRNA:   3'- -UUGuCUGGCgCCUgUGCCU-CCCUCag -5'
5382 3' -58.9 NC_001798.1 + 153991 0.66 0.75582
Target:  5'- ---cGACCGCGGuucccgagucguacGCAgGGAccauuuGGGAGUCu -3'
miRNA:   3'- uuguCUGGCGCC--------------UGUgCCU------CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 150576 0.67 0.729988
Target:  5'- cGCGGGgcggCGCGGAgacgGCGGGGGaGAGUCg -3'
miRNA:   3'- uUGUCUg---GCGCCUg---UGCCUCC-CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 34620 0.67 0.729988
Target:  5'- --aGGGCgGCGGcgGCGGGGGGGGg- -3'
miRNA:   3'- uugUCUGgCGCCugUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 86259 0.67 0.739634
Target:  5'- aAGCAcGGCCGgGGGCGCGGgcgcaccggcGGGGAa-- -3'
miRNA:   3'- -UUGU-CUGGCgCCUGUGCC----------UCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 41432 0.67 0.739634
Target:  5'- uAGCAGA-CGCGGGCGUGG-GGG-GUCc -3'
miRNA:   3'- -UUGUCUgGCGCCUGUGCCuCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 150631 0.67 0.739634
Target:  5'- --uGGGCCGCGcGGggcugucuCGCGGGGGGcGUCc -3'
miRNA:   3'- uugUCUGGCGC-CU--------GUGCCUCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 27222 0.67 0.739634
Target:  5'- gGGCGGGgCGCGGGggaggcggcCGCGG-GGGAGg- -3'
miRNA:   3'- -UUGUCUgGCGCCU---------GUGCCuCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 55985 0.67 0.739634
Target:  5'- gGGgAGGCCGCGGGgGCGaGGGGcugguaggcGGGUCc -3'
miRNA:   3'- -UUgUCUGGCGCCUgUGC-CUCC---------CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 79276 0.67 0.739634
Target:  5'- cGGCGG-CCGCGGACcuggccccguggGCGGuGGaGGAGUUc -3'
miRNA:   3'- -UUGUCuGGCGCCUG------------UGCC-UC-CCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 121392 0.67 0.739634
Target:  5'- uACGuGCCgGCGGAUGCGGuGGGGG-Cg -3'
miRNA:   3'- uUGUcUGG-CGCCUGUGCCuCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 36269 0.67 0.74919
Target:  5'- --uGGACCccgggGUGGGCgGCGGGGGGGGg- -3'
miRNA:   3'- uugUCUGG-----CGCCUG-UGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 149742 0.67 0.74919
Target:  5'- cGCAGcAgCGCGGGgGCcGAGGGAGg- -3'
miRNA:   3'- uUGUC-UgGCGCCUgUGcCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 58697 0.67 0.74919
Target:  5'- --aGGGCCGCGGcgGCGCGGGGGucGaUCc -3'
miRNA:   3'- uugUCUGGCGCC--UGUGCCUCCcuC-AG- -5'
5382 3' -58.9 NC_001798.1 + 135794 0.67 0.74919
Target:  5'- gAGgAGGCCGUGuGCGCGGcccGGGGcGUCa -3'
miRNA:   3'- -UUgUCUGGCGCcUGUGCC---UCCCuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.