miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 86259 0.67 0.739634
Target:  5'- aAGCAcGGCCGgGGGCGCGGgcgcaccggcGGGGAa-- -3'
miRNA:   3'- -UUGU-CUGGCgCCUGUGCC----------UCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 41432 0.67 0.739634
Target:  5'- uAGCAGA-CGCGGGCGUGG-GGG-GUCc -3'
miRNA:   3'- -UUGUCUgGCGCCUGUGCCuCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 150631 0.67 0.739634
Target:  5'- --uGGGCCGCGcGGggcugucuCGCGGGGGGcGUCc -3'
miRNA:   3'- uugUCUGGCGC-CU--------GUGCCUCCCuCAG- -5'
5382 3' -58.9 NC_001798.1 + 27222 0.67 0.739634
Target:  5'- gGGCGGGgCGCGGGggaggcggcCGCGG-GGGAGg- -3'
miRNA:   3'- -UUGUCUgGCGCCU---------GUGCCuCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 55985 0.67 0.739634
Target:  5'- gGGgAGGCCGCGGGgGCGaGGGGcugguaggcGGGUCc -3'
miRNA:   3'- -UUgUCUGGCGCCUgUGC-CUCC---------CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 79276 0.67 0.739634
Target:  5'- cGGCGG-CCGCGGACcuggccccguggGCGGuGGaGGAGUUc -3'
miRNA:   3'- -UUGUCuGGCGCCUG------------UGCC-UC-CCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 121392 0.67 0.739634
Target:  5'- uACGuGCCgGCGGAUGCGGuGGGGG-Cg -3'
miRNA:   3'- uUGUcUGG-CGCCUGUGCCuCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 34620 0.67 0.729988
Target:  5'- --aGGGCgGCGGcgGCGGGGGGGGg- -3'
miRNA:   3'- uugUCUGgCGCCugUGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 150576 0.67 0.729988
Target:  5'- cGCGGGgcggCGCGGAgacgGCGGGGGaGAGUCg -3'
miRNA:   3'- uUGUCUg---GCGCCUg---UGCCUCC-CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 28760 0.67 0.720259
Target:  5'- --aAGACgGCGGACccGCGGAGgaGGAGg- -3'
miRNA:   3'- uugUCUGgCGCCUG--UGCCUC--CCUCag -5'
5382 3' -58.9 NC_001798.1 + 30949 0.67 0.720259
Target:  5'- gGGCGGGggGCGGGCGgggguCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUggCGCCUGU-----GCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 79371 0.67 0.720259
Target:  5'- --aGGGCCGgcggccagaCGGGCGCGGGcGcGGAGUCc -3'
miRNA:   3'- uugUCUGGC---------GCCUGUGCCU-C-CCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 15371 0.67 0.720259
Target:  5'- gAAUcGGCCGUGGGCGCGGc-GGAGg- -3'
miRNA:   3'- -UUGuCUGGCGCCUGUGCCucCCUCag -5'
5382 3' -58.9 NC_001798.1 + 153667 0.67 0.710457
Target:  5'- cGCGGcgcguCCGCGGGCGgGGAcgcGGGGGcCg -3'
miRNA:   3'- uUGUCu----GGCGCCUGUgCCU---CCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 15054 0.67 0.710457
Target:  5'- gGAUGGGCC-CGGggcGCGCGGGGGGuGGUUu -3'
miRNA:   3'- -UUGUCUGGcGCC---UGUGCCUCCC-UCAG- -5'
5382 3' -58.9 NC_001798.1 + 130698 0.67 0.700591
Target:  5'- cAACgAGACCGCGGcggcggccguGCACaGGAGGGuGcCc -3'
miRNA:   3'- -UUG-UCUGGCGCC----------UGUG-CCUCCCuCaG- -5'
5382 3' -58.9 NC_001798.1 + 139934 0.67 0.700591
Target:  5'- aAGCGGGCCcugGCGGcGCACGGGGGcGAa-- -3'
miRNA:   3'- -UUGUCUGG---CGCC-UGUGCCUCC-CUcag -5'
5382 3' -58.9 NC_001798.1 + 26979 0.68 0.690669
Target:  5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 26949 0.68 0.690669
Target:  5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 26905 0.68 0.690669
Target:  5'- gGGCGGGCgGgGGucGgGCGGGcGGGGGUCg -3'
miRNA:   3'- -UUGUCUGgCgCC--UgUGCCU-CCCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.